mgnify-search

name	mgnify-search
description	Discover public microbiome and metagenomics studies through MGnify. Use for biome, sample, assembly, taxonomic, functional, or public microbiome dataset questions.
license	MIT

MGnify Search

1. Call science_search_mgnify with a biome, host, disease, location, assay, or accession query.
2. Verify study/sample/analysis level, biome ontology, host, sequencing method, pipeline version, and public status.
3. Preserve sample and study identifiers; do not collapse repeated subjects, sites, or longitudinal samples.
4. Record accession, release, pipeline, query, and files used with $science-provenance.

Do not compare abundance across studies without accounting for extraction, sequencing, pipeline, compositionality, batch, and sampling design.

Source basis: MGnify API.