| name | mgnify-search |
| description | Discover public microbiome and metagenomics studies through MGnify. Use for biome, sample, assembly, taxonomic, functional, or public microbiome dataset questions. |
| license | MIT |
MGnify Search
- Call
science_search_mgnify with a biome, host, disease, location, assay, or accession query.
- Verify study/sample/analysis level, biome ontology, host, sequencing method, pipeline version, and public status.
- Preserve sample and study identifiers; do not collapse repeated subjects, sites, or longitudinal samples.
- Record accession, release, pipeline, query, and files used with
$science-provenance.
Do not compare abundance across studies without accounting for extraction, sequencing, pipeline, compositionality, batch, and sampling design.
Source basis: MGnify API.