pcingola

Compute checksums (MD5, SHA-256) for text or files.

Review code for quality, bugs, and security issues.

Build book

Check chapters consistency betweend chapters.md and chapters/*/chapter.md

Review chapter

Does stuff

Extract text and tables from PDF files.

A code formatting skill that counts lines and words in text files. Use this skill when you need basic file statistics.

Run SnpEff, a variant annotation and effect prediction tool for genomic variants. Use when the user wants to annotate VCF files, build genome databases, or use SnpEff utilities.

Run SnpSift, a toolbox for filtering and manipulating annotated VCF files. Use when the user wants to filter variants, annotate with databases (dbNSFP, dbSnp, GWAS), extract fields, or manipulate VCF files.