القائمة
Use when maintaining a local NIH Open Citation Collection archive for offline citation-link lookups in EDirect workflows.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
Use when joint-genotyping one or more germline gVCFs into a cohort VCF with GATK GenotypeGVCFs.
Use when running GATK HaplotypeCaller to emit per-sample germline variant calls or gVCFs from analysis-ready BAM/CRAM inputs.
Use when splitting mixed accession-like text into one lowercase token per line in EDirect-style text pipelines.
Use when converting ACE assembly files into SAM while preserving legacy ACE-specific padded or contig-sequence behavior.
Use when pretty-printing tab-delimited output with left, center, right, or decimal-aware numeric alignment in EDirect text workflows.
Use when masking columns or coordinate ranges in multiple-sequence alignments before downstream HMMER or alignment-processing steps.
| name | archive-nihocc |
| description | Use when maintaining a local NIH Open Citation Collection archive for offline citation-link lookups in EDirect workflows. |
| disable-model-invocation | true |
| user-invocable | true |
archive-nihocc [daily|-index]/home/vimalinx/miniforge3/envs/bio/bin/archive-nihoccCITED / CITES posting files after the upstream OCC bundle changes.# 1) Download or refresh the local OCC archive
export EDIRECT_LOCAL_ARCHIVE=/data/edirect
archive-nihocc
# 2) Incrementally rebuild index and invert layers after new data arrives
archive-nihocc daily
# 3) Rebuild the full local search/postings structures
archive-nihocc -index
EDIRECT_LOCAL_ARCHIVE and confirm the archive root is writable before invoking the script.archive-nihocc to refresh the downloaded OCC bundle in the archive tree.daily or -index as a separate command, depending on whether you need only incremental rebuilds or a full postings refresh.DWN, IDX, INV, MRG, and PST timing lines before trusting the local archive.--help and --version are not metadata-only here; they still enter archive setup logic and fail if prerequisites are missing.EDIRECT_LOCAL_ARCHIVE, pm-setup, pm-prepare, and a working local go compiler.daily / -index.clean, scrub, scour, scratch, erase) remove local scratch material and should be treated as destructive maintenance.