القائمة
Use when maintaining a local PubMed-to-PMCID postings archive for offline identifier crosswalks in EDirect workflows.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
Use when joint-genotyping one or more germline gVCFs into a cohort VCF with GATK GenotypeGVCFs.
Use when running GATK HaplotypeCaller to emit per-sample germline variant calls or gVCFs from analysis-ready BAM/CRAM inputs.
Use when splitting mixed accession-like text into one lowercase token per line in EDirect-style text pipelines.
Use when converting ACE assembly files into SAM while preserving legacy ACE-specific padded or contig-sequence behavior.
Use when pretty-printing tab-delimited output with left, center, right, or decimal-aware numeric alignment in EDirect text workflows.
Use when masking columns or coordinate ranges in multiple-sequence alignments before downstream HMMER or alignment-processing steps.
| name | archive-pids |
| description | Use when maintaining a local PubMed-to-PMCID postings archive for offline identifier crosswalks in EDirect workflows. |
| disable-model-invocation | true |
| user-invocable | true |
archive-pids [daily|-index]/home/vimalinx/miniforge3/envs/bio/bin/archive-pidsPMCID field.# 1) Refresh the local PMCID postings archive
export EDIRECT_LOCAL_ARCHIVE=/data/edirect
archive-pids
# 2) Rebuild incremental index and invert layers after a refresh
archive-pids daily
# 3) Rebuild merged postings for downstream local queries
archive-pids -index
EDIRECT_LOCAL_ARCHIVE and verify the target archive tree is writable.pm-setup, pm-prepare, and the local Go toolchain are available.archive-pids to refresh the underlying PMCID data.daily or -index as a separate maintenance command when you need refreshed postings.--help and --version are not safe here; they still execute archive setup and prerequisite checks.EDIRECT_LOCAL_ARCHIVE, pm-setup, pm-prepare, and a working local go compiler.