paper-writing-skills-index

Skills for the Paper Write Team: report and academic templates for HTML/PDF rendering. Each template file is self-contained (HTML + CSS or LaTeX in a single markdown file).

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Repository: BioTender-max/awesome-bio-agent-skills
Last source activity: May 30, 2026 at 17:45
Detected SKILL.md language: English
Stars: 165
Forks: 29

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npx skills add https://github.com/BioTender-max/awesome-bio-agent-skills --skill paper-writing-skills-index

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SKILL.md

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bio-agent-skills-hub

Discover and invoke 1,676 deduplicated biomedical AI agent skills from the Awesome Bio Agent Skills repository (20 source repos, 15 categories). Use this skill as a router whenever a user needs a bioinformatics/biomedical task (genomics, transcriptomics, single-cell, proteomics, protein design, clinical, epigenomics, multi-omics, pathway, metagenomics, database queries, visualization, workflows): search the index, locate the best-matching skill, fetch its SKILL.md, and follow it.

2026-05-30

bio-comparative-genomics-ortholog-inference

Infer orthologous genes and gene families across species using OrthoFinder3 (HOG-based phylogenetic orthology), SonicParanoid2, Broccoli, ProteinOrtho, OMA / FastOMA hierarchical orthologous groups, eggNOG-mapper, JustOrthologs, and TOGA whole-genome-alignment orthology. Use when building single-copy ortholog sets for phylogenomics, classifying co-orthologs and in/out-paralogs after gene duplication, propagating functional annotation via orthology with awareness of the ortholog conjecture, distinguishing speciation from duplication via gene-tree species-tree reconciliation, computing Quest-for-Orthologs benchmark performance, or running synteny-aware ortholog detection in WGD-affected lineages.

2026-05-30

eqtl-catalogue-region-fetch

Fetch a region of cis-eQTL summary statistics from EBI eQTL Catalogue v7+ via tabix-on-FTP. Use when an agent needs eQTL beta / SE / p-value for every variant in a window around a gene's TSS for one specific dataset (study × tissue × quantification method). Input: dataset_id, chromosome, start, end, optional molecular_trait_id. Output: harmonised TSV slice.

2026-05-30

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id	paper_writing_skills_index
name	Paper Writing Skills Index
description	Skills for the Paper Write Team: report and academic templates for HTML/PDF rendering. Each template file is self-contained (HTML + CSS or LaTeX in a single markdown file).