paper-writing-skills-index

Skills for the Paper Write Team: report and academic templates for HTML/PDF rendering. Each template file is self-contained (HTML + CSS or LaTeX in a single markdown file).

Ir a la instalación

Repositorio: BioTender-max/awesome-bio-agent-skills
Última actividad en el origen: 30 de mayo de 2026 a las 17:45
Idioma detectado de SKILL.md: inglés
Estrellas: 165
Forks: 29

Opciones de instalación

De forma predeterminada está seleccionado el prompt que primero revisa el origen. Puedes cambiar a un comando directo o descargar una copia local.

Instalar con Codex o Claude Copia este prompt, pégalo en Codex, Claude u otro asistente, y deja que revise la página de la skill y la instale por ti.

Un comando directo omite el prompt de revisión. Revisa el origen antes de ejecutarlo.

npx skills add https://github.com/BioTender-max/awesome-bio-agent-skills --skill paper-writing-skills-index

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Lee SKILL.md y los archivos complementarios que muestra SkillsMP antes de decidir si quieres instalarlo.

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SKILL.md

Instrucciones de origen · Vista previa de solo lectura

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bio-agent-skills-hub

Discover and invoke 1,676 deduplicated biomedical AI agent skills from the Awesome Bio Agent Skills repository (20 source repos, 15 categories). Use this skill as a router whenever a user needs a bioinformatics/biomedical task (genomics, transcriptomics, single-cell, proteomics, protein design, clinical, epigenomics, multi-omics, pathway, metagenomics, database queries, visualization, workflows): search the index, locate the best-matching skill, fetch its SKILL.md, and follow it.

2026-05-30

bio-comparative-genomics-ortholog-inference

Infer orthologous genes and gene families across species using OrthoFinder3 (HOG-based phylogenetic orthology), SonicParanoid2, Broccoli, ProteinOrtho, OMA / FastOMA hierarchical orthologous groups, eggNOG-mapper, JustOrthologs, and TOGA whole-genome-alignment orthology. Use when building single-copy ortholog sets for phylogenomics, classifying co-orthologs and in/out-paralogs after gene duplication, propagating functional annotation via orthology with awareness of the ortholog conjecture, distinguishing speciation from duplication via gene-tree species-tree reconciliation, computing Quest-for-Orthologs benchmark performance, or running synteny-aware ortholog detection in WGD-affected lineages.

2026-05-30

eqtl-catalogue-region-fetch

Fetch a region of cis-eQTL summary statistics from EBI eQTL Catalogue v7+ via tabix-on-FTP. Use when an agent needs eQTL beta / SE / p-value for every variant in a window around a gene's TSS for one specific dataset (study × tissue × quantification method). Input: dataset_id, chromosome, start, end, optional molecular_trait_id. Output: harmonised TSV slice.

2026-05-30

Ver todos los de este repositorio

Paper Writing Skills

Resources for the Paper Write Team's reporter agent. Each template is a self-contained markdown file with the full HTML+CSS or LaTeX content.

Templates

Template

File

Style

Use Case

report_standard

report_standard.md

Professional report (Manus-style), HTML+CSS

Default for all reports

report_academic

report_academic.md

Formal academic paper, HTML+CSS

HTML preview for academic papers

latex_cn

latex_cn.md

Chinese academic paper, LaTeX

Chinese academic PDF via Tectonic

latex_en

latex_en.md

English academic paper, LaTeX

English academic PDF via Tectonic

How to Use

Report style (default)

Reporter reads this skill index

Reporter reads report_standard.md — contains both the HTML template and CSS

Reporter reads paper.md, parses frontmatter, converts Markdown body to HTML

Reporter fills the HTML template with metadata + CSS + content

Reporter writes the final HTML file

The UI exports the HTML to PDF on user request (browser print-to-PDF using the @media print CSS rules)

Academic style

Reporter reads this skill index

Reporter reads the LaTeX template (latex_cn.md or latex_en.md based on lang)

Reporter reads paper.md, parses frontmatter, converts Markdown body to LaTeX

Reporter fills the LaTeX template with metadata + content, writes .tex file

Reporter runs Tectonic to compile PDF

Reporter also reads report_academic.md to generate an HTML preview

Custom templates

Users can add their own .md template files to this directory following the same format (frontmatter + HTML/CSS or LaTeX in code blocks).

id	paper_writing_skills_index
name	Paper Writing Skills Index
description	Skills for the Paper Write Team: report and academic templates for HTML/PDF rendering. Each template file is self-contained (HTML + CSS or LaTeX in a single markdown file).