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ma-compbio-lab
GitHub creator profile

ma-compbio-lab

Repository-level view of 39 collected skills across 1 GitHub repository.

skills collected
39
repositories
1
updated
Apr 5, 2026
repository explorer

Repositories and representative skills

clinicaltrials-study-search
Data Scientists

Use this skill to search the current ClinicalTrials.gov v2 API for condition or keyword matches when you need official clinical-study metadata. Do not use it for legacy API URLs or offline work.

Apr 5, 2026
ensembl-gene-lookup
Biological Scientists, All Other

Use this skill to resolve a gene symbol to Ensembl IDs and fetch a canonical Ensembl gene record. Do not use it for full transcript annotation pipelines or offline work.

Apr 5, 2026
ncbi-gene-search
Biological Scientists, All Other

Use this skill to search NCBI Gene by symbol and organism, then fetch compact official Entrez Gene summaries. Do not use it for variant interpretation, transcript-level modeling, or bulk offline annotation.

Apr 5, 2026
cwl-commandlinetool-starter
Software Developers

Use this skill to author and run a minimal Common Workflow Language CommandLineTool and one-step workflow with cwltool. Do not use it for containerized production execution or complex scatter/gather workflows.

Apr 5, 2026
nextflow-hello-workflow
Software Developers

Use this skill to run a minimal Nextflow workflow through the repo-managed Java and Nextflow prefix, either locally or on the Slurm cluster. Do not use it for containerized production pipelines.

Apr 5, 2026
nf-core-pipeline-list
Software Developers

Use this skill to verify the repo-managed nf-core tools install and retrieve a cleaned summary of available pipelines. Do not use it for interactive launch flows or full pipeline downloads.

Apr 5, 2026
snakemake-toy-workflow-starter
Software Developers

Use this skill to run a tiny Snakemake workflow through the repo-managed Snakemake prefix and inspect deterministic toy outputs.

Apr 5, 2026
wdl-task-starter
Software Developers

Use this skill to author and run a minimal WDL task and workflow with miniwdl. Do not use it for Cromwell-specific backends or large imported workflow graphs.

Apr 5, 2026
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