NeuroAIHub/BrainPilot - Page 2

visual-search-array-generator

Specifies display parameters, set sizes, target-distractor similarity, and randomization constraints for visual search experiments

reading-time-analysis

Guides analysis of eye-tracking reading measures including first fixation, gaze duration, regression path, and total reading time

self-paced-reading-designer

Expert guidance for designing self-paced reading experiments: region segmentation, timing parameters, comprehension probes, and spillover analysis

sentence-stimulus-norming

Specifies norming procedures for linguistic stimuli including cloze probability, plausibility ratings, acceptability judgments, and lexical controls

eeg-paradigm-designer

Expert guidance for designing EEG paradigms optimized to isolate specific ERP components, with domain-validated timing, trial count, and control condition parameters

eeg-preprocessing-pipeline-guide

Guides EEG preprocessing: filtering, artifact rejection (ICA/ASR), re-referencing, interpolation

erp-analysis

Domain-validated pipeline and parameter guidance for event-related potential analysis, from preprocessing through statistical testing

mne-python-guide

Domain-validated pipeline guidance for EEG/MEG data analysis using MNE-Python: data loading, preprocessing (filtering, ICA, re-referencing), epoching, ERP/ERF computation, time-frequency decomposition, source localization, decoding/MVPA, statistical testing,…

brain-connectivity-modeler

Advises on functional/effective connectivity methods: PPI, DCM, Granger causality, graph theory

fmri-glm-analysis-guide

Domain-validated guidance for fMRI General Linear Model specification: HRF modeling, design matrix construction, contrast definition, confound regression, and statistical inference

fmri-preprocessing-pipeline-guide

Domain-validated guidance for fMRI preprocessing decisions: motion correction, slice timing, spatial normalization, smoothing, confound regression, and quality control

fmri-task-design-guide

Guides fMRI task design: block vs. event-related vs. mixed; jittering; contrasts; power for BOLD detection

neural-decoding-analysis

Domain-validated methods and decision logic for neural decoding, RSA, temporal generalization, and encoding models in systems neuroscience

pycortex-guide

Domain-validated guidance for cortical surface visualization and brain surface rendering of fMRI data using pycortex: data types (Volume, Vertex, Dataset), 2D cortical flatmaps, 3D WebGL brain viewers, volume-to-surface mapping, FreeSurfer/fMRIPrep…

act-r-model-builder

Guides ACT-R cognitive model construction: chunk types, production rules, subsymbolic parameters, and model validation

bayesian-cognitive-model-builder

Domain-validated guidance for building hierarchical Bayesian cognitive models with Stan/PyMC: prior specification, model structure, MCMC diagnostics, and posterior predictive checks

parameter-recovery-checker

Guides parameter recovery studies to validate model identifiability before trusting fitted parameter values

neural-population-analysis-guide

Guides dimensionality reduction and latent-variable analysis of neural populations (PCA, GPFA, dPCA)

spiking-network-model-builder

Assists building spiking neural network simulations: neuron models, connectivity, plasticity rules

calcium-imaging-analysis-guide

Domain-validated pipeline guidance for calcium imaging data analysis: motion correction, ROI extraction, neuropil correction, spike inference, and quality control

optogenetics-protocol-designer

Domain-validated decision logic for optogenetic stimulation parameter selection, including opsin choice, light delivery, pulse protocols, fiber placement, and control conditions

lesion-symptom-mapping-guide

Advises on lesion-symptom mapping methods: VLSM, disconnection analysis, network lesion mapping

neuropsych-battery-selector

Domain-validated decision logic for selecting neuropsychological test batteries matched to suspected cognitive deficit profiles

infant-looking-time-designer

Designs habituation and preferential-looking paradigms with age-appropriate timing parameters and exclusion criteria

tom-task-selector

Selects Theory of Mind tasks matched to target population, age, and construct with psychometric guidance

nature-figure

Submission-grade Nature/high-impact journal figure workflow for Python or R. Use whenever the user asks to create, revise, audit, or polish manuscript figures, multi-panel scientific plots, figures4papers-style matplotlib plots, or journal-ready SVG/PDF/TIFF…

markdown-report-writing

Guide AI agents to write beautifully formatted, well-illustrated Markdown reports with proper structure, diagrams, and compatibility across GitHub and Obsidian. Use this skill whenever the user asks you to write a report, project documentation, experiment…

neuroimaging-power-guide

Sample-size planning for fMRI/EEG studies using effect-size benchmarks and simulation-based power

neuroimaging-sample-size-calculator

Simulation-based sample-size planning for neuroimaging studies using effect-size maps