openJiuwen-ai/sciencediscovery

gitcode

Operate GitCode issues, PRs, wikis, code/MR refs, and cached org templates. Use for gitcode.com, atomgit.com, GitCode issues/PRs, wiki, or /gitcode.

deploy

Deploy or run the ScienceDiscovery stack, either as host processes (scripts/start-stack.sh) or with Docker Compose. Use when the user asks to deploy, start, run, or containerize ScienceDiscovery, or asks for the UI URL, SSH port forwarding, or…

e2e-testing

Write, group, select, and run browser E2E tests for ScienceDiscovery (Playwright specs in test/). Use when adding or changing an E2E spec, filtering E2E CI cases by environment tags, running the mocked or real E2E group, isolating a test stack (worktree,…

antibody-protenix-pipeline

Prepare, submit, monitor, and summarize the real RFdiffusion to ProteinMPNN to Protenix antibody pipeline through the ScienceDiscovery Runner NPU Broker, including custom workspace-local antigen PDBs and chain-labelled epitopes.

citation-reviewer

Verify cited paper identity and decide whether claims in an Artifact are supported by their linked Evidence using a governed source snapshot.

code-engineer

Use this skill when you need to write and execute Python/R code to process, transform, and analyze data, delivering reproducible computational results with complete code-level methodology documentation. Supports statistical analysis, data transformation,…

computation-reviewer

Check whether numeric claims marked with Evidence aliases in an Artifact agree with the linked Evidence content and context.

evidence-extractor

Use this skill when a research workflow needs source-grounded evidence extraction from a `literature_sources.json` package or compatible source list. Produces an integration-ready evidence package with claims, evidence, citations, confidence/strength labels,…

life-science-evidence-brief

Research scientific questions with enabled literature and database connectors, distinguish curated annotations from paper evidence, and produce a cautious claim-to-source brief. Use for gene/protein function summaries, literature scans, evidence tables, paper…

literature-searcher

Use this skill when a research workflow needs verified academic source retrieval through literature-search MCP interfaces available in the current session before evidence extraction. Discovers and selects relevant interfaces adaptively, then produces…

report-writer

Receives Domain Summaries (Knowledge Summary, Analysis Summary, or both) from the science-research-team orchestrator, performs cross-domain synthesis (identifying SUPPORTS/CONTRADICTS/INFORMS/INDEPENDENT connections), surfaces contradictions verbatim, and…

result-evaluator

Evaluate analysis results for quality and reliability. Scores Accuracy, Completeness, Robustness, and Relevance (0-10), checks source reliability and methodology, audits statistical rigor, and decides ACCEPT_AND_PROCEED or REVISE_AND_RETRY. NOT for performing…

science-research-team

Use this skill to orchestrate a multi-domain research team for literature/evidence research and data analysis. Dispatches the right domain(s) based on the user's request, runs each domain to completion with its own loop, then synthesizes into reports. Load…

structure-pocket-inspection

Inspect a local PDB structure, summarize chains and residue composition, and identify protein atoms near a user-specified ligand or pocket center. Use for reproducible first-pass structure and binding-site inspection before heavier modeling.