Menu
Skills in this repository
SkillsMP has collected 163 skills from PKU-EMBL/Metagenomics-Skills. Open a skill to review its source and details.
PKU-EMBL/Metagenomics-SkillsShowing 3 of 163 collected skills.
Protein-coding gene prediction; use -p meta for metagenomes. Use this skill when working with prodigal: installing, choosing parameters, running commands, interpreting outputs, or troubleshooting. Upstream: https://github.com/hyattpd/Prodigal. For routing…
Fetch and cite public shotgun metagenomic reads from NCBI SRA and EBI ENA. Use this skill when: (1) Downloading public metagenomes by SRR/ERR/DRR, (2) Resolving BioProject/Study accessions, (3) Choosing fasterq-dump vs ena-ftp / Aspera, (4) Building manifests…
Viral sequence identification from metagenomic assemblies. Use this skill when working with virsorter2: installing, choosing parameters, running commands, interpreting outputs, or troubleshooting. Upstream: https://github.com/jiarong/VirSorter2. For routing…