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Query and explore the 2600: The Hacker Quarterly magazine archive (1984-present) via DuckDB. Provides structured access to 168+ issues covering hacker culture, security, privacy, telephony, and digital rights without loading full content into context.

ACSets (Attributed C-Sets): Algebraic databases with Specter-style bidirectional navigation. Category-theoretic formalism for relational databases.

Attributed C-Sets as algebraic databases. Category-theoretic data structures generalizing graphs and dataframes with Gay.jl color integration.

ACSets (Attributed C-Sets): Algebraic databases with Specter-style bidirectional

Bridge active inference theory with robot control using K-Scale's JAX/MuJoCo stack. Use when connecting predictive coding to locomotion policies, mapping KL divergence minimization to RL training, applying mean field approximation to robotics state estimation, or implementing sim2real as inference about future observations.

Implement affective valence as directional derivative of interoceptive energy landscapes for AI alignment. Use when building alignment-aware RL agents, validating GF(3) conservation in reward signals, training Langevin-based policies, or analyzing fold-change detection signals in POMDP environments.

Category-theoretic graph rewriting with DPO, SPO, and SqPO pushouts for C-Sets. Declarative transformation of acset data structures.

Tour of Alice's heavily-customized terminal Emacs — Causal transients, Worlding org, proof tooling, MLX chat, voice, and clipboard.

Comprehensive Artificial Life skill combining ALIFE2025 proceedings, classic texts (Axelrod, Epstein-Axtell), ALIEN simulation, Lenia, NCA, swarm intelligence, and evolutionary computation. 337 pages extracted, 80+ papers, 153 figures.

Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.

Interruption pattern detection and retrieval from Amp thread history. Use for analyzing tool rejection patterns and improving agent behavior.

Anna's Archive integration for academic paper and book retrieval. Search shadow libraries (Library Genesis, Z-Library, Sci-Hub) via unified API with GF(3) balanced caching.

Augmented reality (AR) reality tech. Passthrough overlays, hit-test/anchors, occlusion, lighting, camera permissions, and safety.

Unified ASI skill combining ACSets, Gay-MCP colors, bisimulation games, world-hopping, glass-bead synthesis, and triad interleaving for autonomous skill dispersal.

Lee Cronin's Assembly Theory for molecular complexity measurement and life detection via assembly index computation.

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.

Self-modifying AI agent configuration via ruler + MCP + DuckDB. All behavior mods become one-liners.

Unified messaging via Beeper Desktop MCP. Search chats, send messages, manage conversations across all networks (iMessage, WhatsApp, Signal, Telegram, Discord, Slack, etc.)

Behaviour Surprisal Analysis

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.

Bisimulation game for resilient skill dispersal across AI agents with GF(3) conservation and observational bridge types.

Go-based security techniques from "Black Hat Go" extended with macOS, Cloud, Mobile, IoT, Supply Chain, API, Web3, AI/ML, Red Team, ATT&CK, and LLM chapters. 186 techniques, 36 tools, 33 defenses across 37 chapters. Includes adversarial bisimulation games with Ungar (order-dependent) and join-semilattice structures. AAIF-compatible multiplayer agent games for human-agent security exercises.

Interactive assistant for intercepting, debugging, analyzing and reviewing Claude Code API requests using mitmproxy. Guides setup, certificate configuration, and active traffic inspection via web or CLI interface. Supports learning Claude Code internals, debugging issues, and optimizing API usage.

Documentation and orchestration for the bmorphism/ies flox environment toolkit

Browser History ACSet

Binary visualization for human pattern recognition - Ghidra plugin by Chris Domas (xoreaxeaxeax)

CapTP: Capability Transfer Protocol

Rust package manager (36 subcommands).

cat Skill: Derivational Pipe Chaining

Chemical reaction network modeling with Catalyst.jl. Autopoietic systems, unit-aware ODEs, and interacting subsystems.

CatColab Causal Loop Diagrams - systems dynamics modeling with reinforcing (R) and balancing (B) feedback loops, delays, and Lotka-Volterra semantics for strategic analysis.

CatColab Decapodes - Discrete Exterior Calculus for PDE modeling on meshes via Decapodes.jl integration. Model physics equations compositionally with automatic code generation.

CatColab Ologs (Ontology Logs) - category-theoretic knowledge representation where objects are concepts and morphisms are functional relationships. Foundation for database schemas and conceptual modeling.

CatColab Petri Nets - concurrent system modeling via places (states), transitions (events), and token flow. Foundation for process algebra, workflow, and chemical reaction networks.

CatColab Regulatory Networks - signed graphs for molecular biology modeling gene regulatory networks with positive (activating) and negative (inhibiting) edges.

CatColab Schemas - database schema modeling distinguishing entities (tables) from attributes (columns). Foundation for ACSets (Attributed C-Sets) and AlgebraicJulia data structures.

CatColab Stock-and-Flow Diagrams - epidemiological and ecological modeling with stocks (accumulations), flows (rates), and mass-action ODE semantics for SIR models and population dynamics.

Intercept and debug Claude Code API requests using mitmproxy. Inspect system prompts, tool definitions, token usage, and streaming responses. Triggers: cc-trace, mitmproxy, API interception, Claude Code debugging, traffic inspection.