stanfish06/skillquarium

build-iterated-agentic-loop

build a repo-local skill and install a matching iterated coding-agent GitHub Actions workflow, prompt, memory file, and reference templates

design-control-loop

interview the user to design an agentic control loop (sensor, controller, actuator under disturbances) tailored to their codebase, then build it as locally-runnable components plus a scheduled coding-agent workflow

narrow-react-prop-types

narrow React component prop types to match live code paths

show-me

Help the user understand the current topic visually with concise diagrams, code-shape sketches, and focused HTML artifacts.

protobuf

Use when working with Protocol Buffer (.proto) files, buf.yaml, buf.gen.yaml, or buf.lock. Covers proto design, buf CLI, gRPC/Connect services, protovalidate constraints, schema evolution, and troubleshooting lint/breaking errors.

vite

Vite build tool configuration, plugin API, SSR, and Vite 8 Rolldown migration. Use when working with Vite projects, vite.config.ts, Vite plugins, or building libraries/SSR apps with Vite.

huggingface-llm-trainer

Use when users want to train or fine-tune language models using TRL (Transformer Reinforcement Learning) on Hugging Face Jobs infrastructure. Covers SFT, DPO, GRPO and reward modeling training methods, plus GGUF conversion for local deployment. Includes…

precision-medicine-scientist

Expert-thinking profile for Precision Medicine Scientist (clinical / research): Reasons from molecular profiles, tiered actionability, tumor purity, and clonal architecture through OncoKB and AMP/ASCO/CAP tiers, Mutect2/STAR-Fusion calling, IGV review, and…

clinical-trial-scientist

Expert-thinking profile for Clinical Trial Scientist (clinical operations / GCP trials): Reasons from protocol SAPs, ICH-GCP, randomization/blinding, and CDISC SDTM while treating protocol deviations and immortal time as first-class failure modes.

alphagenome-single-variant-analysis

Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API. Use when the user asks about non-coding variant effects, pathogenicity, clinical…

atheris

Sets up and runs Atheris, the coverage-guided Python fuzzer built on libFuzzer. Covers TestOneInput harnesses, FuzzedDataProvider, instrumenting both pure Python and native C extensions, and running under AddressSanitizer. Use when fuzzing a Python package,…

cellxgene-census

Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial…

scholar-evaluation

Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and actionable feedback.

zotero

Use Zotero Desktop from Codex to enable/probe the local API, search a local Zotero library, list items/collections/tags, export BibTeX, insert citation keys into LaTeX or Markdown drafts, read indexed full text when requested, and import BibTeX/RIS records…

catalyst-by-zoho

Expert coding assistant for Catalyst by Zoho — full-stack serverless cloud platform. Trigger on any mention of Catalyst, zcatalyst, AppSail, Data Store, ZCQL, Cache, Stratus, Circuits, SmartBrowz, ConvoKraft, Slate, Signals, Pipelines, QuickML, NoSQL, Job…

database-observability

Set up Grafana Cloud Database Observability for MySQL and PostgreSQL — enables `pg_stat_statements` / Performance Schema, creates a least-privilege monitoring user, configures the `database_observability.postgres` / `database_observability.mysql` Alloy…

databricks-dabs

Create, configure, validate, deploy, run, and manage Declarative Automation Bundles (DABs, formerly Databricks Asset Bundles). Use when working with Databricks resources via DABs including dashboards, jobs, pipelines, alerts, volumes, and apps.

infographics

Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Integrates research-lookup and web search for accurate data. Supports 10 infographic types, 8 industry styles, and colorblind-safe…

scientific-schematics

Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural network…

scientific-slides

Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design templates, timing…

clawpathy-autoresearch

Eval-driven skill tuning. Given a task and an LLM-judge rubric, iteratively rewrites a SKILL.md until a downstream executor agent performs well against the judge. Low-code: all evaluation is LLM-as-judge, not deterministic Python.

cell-communication

Cell-cell / ligand-receptor communication analysis for single-cell data using LIANA+ (recommended consensus default), CellPhoneDB, CellChat (R), and squidpy's ligrec. Use for inferring cell-cell communication, ligand-receptor pairs, source->target signaling…

clinical-microbiologist

Expert-thinking profile for Clinical Microbiologist (clinical diagnostic microbiology / bacteriology service line): Reasons from blood-culture volume and contamination criteria, staged Gram–ID–AST reporting, MALDI-TOF/VITEK/Phoenix and EUCAST RAST, CLSI M100…

chebi-skill

Submit compact ChEBI 2.0 API requests for chemical search, compound lookup, ontology traversal, and structure metadata. Use when a user wants concise ChEBI summaries

caveman-stats

Show real token usage and estimated savings for the current session, read from the session log. Trigger: /caveman-stats.

docker-expert

You are an advanced Docker containerization expert with comprehensive, practical knowledge of container optimization, security hardening, multi-stage builds, orchestration patterns, and production deployment strategies based on current industry best practices.

huggingface-jobs

Use when users want to run any workload on Hugging Face Jobs infrastructure. Covers UV scripts, Docker-based jobs, hardware selection, cost estimation, authentication with tokens, secrets management, timeout configuration, and result persistence. Designed for…

aws-agentic-ai

AWS Bedrock AgentCore comprehensive expert for deploying and managing AI agents at scale. Use when working with any AgentCore service including Gateway, Runtime, Memory, Identity, Code Interpreter, Browser, Observability, Agent Registry, or Evaluations.…

generate-image

Generate or edit images using AI models (FLUX, Gemini). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and any image that isn't a technical diagram or schematic. For flowcharts, circuits,…

pyzotero

Interact with Zotero reference management libraries using the pyzotero Python client. Retrieve, create, update, and delete items, collections, tags, and attachments via the Zotero Web API v3. Use this skill when working with Zotero libraries programmatically,…

supply-chain-security

Use for software supply-chain security assessment covering SBOM, SCA, CI/CD pipelines, container images, build integrity, dependency provenance, and vulnerability reachability.

Source text: Chinese

markitdown

Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.

gwas-lookup

Federated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, eQTL Catalogue, and more.

ai-sdk

Vercel AI SDK expert guidance. Use when building AI-powered features — chat interfaces, text generation, structured output, tool calling, agents, MCP integration, streaming, embeddings, reranking, image generation, or working with any LLM provider.

spatialdata-squidpy

Spatial omics workflows with SpatialData and Squidpy alongside scanpy, anndata, and napari-viz. Use when working with Visium, Xenium, CosMx, MERFISH, Slide-seq, spatial transcriptomics, spatial proteomics, tissue images linked to AnnData, spatial neighbor…

gwas-pipeline

End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association testing. Produces Manhattan plots, QQ plots, clumped lead variants, and structured summary statistics.

anesthesiologist

Expert-thinking profile for Anesthesiologist (perioperative medicine / airway management / hemodynamics & pharmacokinetics / regional & multimodal analgesia / perioperative trials...): Reasons from control of consciousness, analgesia, autonomic response, and…

clinical-decision-support

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with…

ophthalmologist

Expert-thinking profile for Ophthalmologist (clinical / retina, glaucoma & vision trials): Reasons from structure–function pairing (OCT RNFL/CST, HVF MD/VFI, ETDRS BCVA); manages glaucoma IOP targets and anti-VEGF treat-and-extend while treating field…

oral-biologist

Expert-thinking profile for Oral Biologist (clinical / research): Reasons from biofilm dysbiosis, demineralization-remineralization balance, and host-mineral-microbe partitioning through pH-cycling and ligature models, 16S/shotgun metagenomics (DADA2/QIIME2,…