stanfish06/skillquarium

build-iterated-agentic-loop

build a repo-local skill and install a matching iterated coding-agent GitHub Actions workflow, prompt, memory file, and reference templates

Langue du texte source : anglais

design-control-loop

interview the user to design an agentic control loop (sensor, controller, actuator under disturbances) tailored to their codebase, then build it as locally-runnable components plus a scheduled coding-agent workflow

Langue du texte source : anglais

narrow-react-prop-types

narrow React component prop types to match live code paths

Langue du texte source : anglais

show-me

Help the user understand the current topic visually with concise diagrams, code-shape sketches, and focused HTML artifacts.

Langue du texte source : anglais

protobuf

Use when working with Protocol Buffer (.proto) files, buf.yaml, buf.gen.yaml, or buf.lock. Covers proto design, buf CLI, gRPC/Connect services, protovalidate constraints, schema evolution, and troubleshooting lint/breaking errors.

Langue du texte source : anglais

vite

Vite build tool configuration, plugin API, SSR, and Vite 8 Rolldown migration. Use when working with Vite projects, vite.config.ts, Vite plugins, or building libraries/SSR apps with Vite.

Langue du texte source : anglais

huggingface-llm-trainer

Use when users want to train or fine-tune language models using TRL (Transformer Reinforcement Learning) on Hugging Face Jobs infrastructure. Covers SFT, DPO, GRPO and reward modeling training methods, plus GGUF conversion for local deployment. Includes…

Langue du texte source : anglais

precision-medicine-scientist

Expert-thinking profile for Precision Medicine Scientist (clinical / research): Reasons from molecular profiles, tiered actionability, tumor purity, and clonal architecture through OncoKB and AMP/ASCO/CAP tiers, Mutect2/STAR-Fusion calling, IGV review, and…

Langue du texte source : anglais

clinical-trial-scientist

Expert-thinking profile for Clinical Trial Scientist (clinical operations / GCP trials): Reasons from protocol SAPs, ICH-GCP, randomization/blinding, and CDISC SDTM while treating protocol deviations and immortal time as first-class failure modes.

Langue du texte source : anglais

alphagenome-single-variant-analysis

Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API. Use when the user asks about non-coding variant effects, pathogenicity, clinical…

Langue du texte source : anglais

atheris

Sets up and runs Atheris, the coverage-guided Python fuzzer built on libFuzzer. Covers TestOneInput harnesses, FuzzedDataProvider, instrumenting both pure Python and native C extensions, and running under AddressSanitizer. Use when fuzzing a Python package,…

Langue du texte source : anglais

cellxgene-census

Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial…

Langue du texte source : anglais

scholar-evaluation

Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and actionable feedback.

Langue du texte source : anglais

zotero

Use Zotero Desktop from Codex to enable/probe the local API, search a local Zotero library, list items/collections/tags, export BibTeX, insert citation keys into LaTeX or Markdown drafts, read indexed full text when requested, and import BibTeX/RIS records…

Langue du texte source : anglais

catalyst-by-zoho

Expert coding assistant for Catalyst by Zoho — full-stack serverless cloud platform. Trigger on any mention of Catalyst, zcatalyst, AppSail, Data Store, ZCQL, Cache, Stratus, Circuits, SmartBrowz, ConvoKraft, Slate, Signals, Pipelines, QuickML, NoSQL, Job…

Langue du texte source : anglais

database-observability

Set up Grafana Cloud Database Observability for MySQL and PostgreSQL — enables `pg_stat_statements` / Performance Schema, creates a least-privilege monitoring user, configures the `database_observability.postgres` / `database_observability.mysql` Alloy…

Langue du texte source : anglais

databricks-dabs

Create, configure, validate, deploy, run, and manage Declarative Automation Bundles (DABs, formerly Databricks Asset Bundles). Use when working with Databricks resources via DABs including dashboards, jobs, pipelines, alerts, volumes, and apps.

Langue du texte source : anglais

infographics

Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Integrates research-lookup and web search for accurate data. Supports 10 infographic types, 8 industry styles, and colorblind-safe…

Langue du texte source : anglais

scientific-schematics

Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural network…

Langue du texte source : anglais

scientific-slides

Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design templates, timing…

Langue du texte source : anglais

clawpathy-autoresearch

Eval-driven skill tuning. Given a task and an LLM-judge rubric, iteratively rewrites a SKILL.md until a downstream executor agent performs well against the judge. Low-code: all evaluation is LLM-as-judge, not deterministic Python.

Langue du texte source : anglais

cell-communication

Cell-cell / ligand-receptor communication analysis for single-cell data using LIANA+ (recommended consensus default), CellPhoneDB, CellChat (R), and squidpy's ligrec. Use for inferring cell-cell communication, ligand-receptor pairs, source->target signaling…

Langue du texte source : anglais

clinical-microbiologist

Expert-thinking profile for Clinical Microbiologist (clinical diagnostic microbiology / bacteriology service line): Reasons from blood-culture volume and contamination criteria, staged Gram–ID–AST reporting, MALDI-TOF/VITEK/Phoenix and EUCAST RAST, CLSI M100…

Langue du texte source : anglais

chebi-skill

Submit compact ChEBI 2.0 API requests for chemical search, compound lookup, ontology traversal, and structure metadata. Use when a user wants concise ChEBI summaries

Langue du texte source : anglais

caveman-stats

Show real token usage and estimated savings for the current session, read from the session log. Trigger: /caveman-stats.

Langue du texte source : anglais

docker-expert

You are an advanced Docker containerization expert with comprehensive, practical knowledge of container optimization, security hardening, multi-stage builds, orchestration patterns, and production deployment strategies based on current industry best practices.

Langue du texte source : anglais

huggingface-jobs

Use when users want to run any workload on Hugging Face Jobs infrastructure. Covers UV scripts, Docker-based jobs, hardware selection, cost estimation, authentication with tokens, secrets management, timeout configuration, and result persistence. Designed for…

Langue du texte source : anglais

aws-agentic-ai

AWS Bedrock AgentCore comprehensive expert for deploying and managing AI agents at scale. Use when working with any AgentCore service including Gateway, Runtime, Memory, Identity, Code Interpreter, Browser, Observability, Agent Registry, or Evaluations.…

Langue du texte source : anglais

generate-image

Generate or edit images using AI models (FLUX, Gemini). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and any image that isn't a technical diagram or schematic. For flowcharts, circuits,…

Langue du texte source : anglais

pyzotero

Interact with Zotero reference management libraries using the pyzotero Python client. Retrieve, create, update, and delete items, collections, tags, and attachments via the Zotero Web API v3. Use this skill when working with Zotero libraries programmatically,…

Langue du texte source : anglais

supply-chain-security

Use for software supply-chain security assessment covering SBOM, SCA, CI/CD pipelines, container images, build integrity, dependency provenance, and vulnerability reachability.

Langue du texte source : chinois

markitdown

Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.

Langue du texte source : anglais

gwas-lookup

Federated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, eQTL Catalogue, and more.

Langue du texte source : anglais

ai-sdk

Vercel AI SDK expert guidance. Use when building AI-powered features — chat interfaces, text generation, structured output, tool calling, agents, MCP integration, streaming, embeddings, reranking, image generation, or working with any LLM provider.

Langue du texte source : anglais

spatialdata-squidpy

Spatial omics workflows with SpatialData and Squidpy alongside scanpy, anndata, and napari-viz. Use when working with Visium, Xenium, CosMx, MERFISH, Slide-seq, spatial transcriptomics, spatial proteomics, tissue images linked to AnnData, spatial neighbor…

Langue du texte source : anglais

gwas-pipeline

End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association testing. Produces Manhattan plots, QQ plots, clumped lead variants, and structured summary statistics.

Langue du texte source : anglais

anesthesiologist

Expert-thinking profile for Anesthesiologist (perioperative medicine / airway management / hemodynamics & pharmacokinetics / regional & multimodal analgesia / perioperative trials...): Reasons from control of consciousness, analgesia, autonomic response, and…

Langue du texte source : anglais

clinical-decision-support

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with…

Langue du texte source : anglais

ophthalmologist

Expert-thinking profile for Ophthalmologist (clinical / retina, glaucoma & vision trials): Reasons from structure–function pairing (OCT RNFL/CST, HVF MD/VFI, ETDRS BCVA); manages glaucoma IOP targets and anti-VEGF treat-and-extend while treating field…

Langue du texte source : anglais

oral-biologist

Expert-thinking profile for Oral Biologist (clinical / research): Reasons from biofilm dysbiosis, demineralization-remineralization balance, and host-mineral-microbe partitioning through pH-cycling and ligature models, 16S/shotgun metagenomics (DADA2/QIIME2,…

Langue du texte source : anglais