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SkillsMP has collected 1,211 skills from stanfish06/skillquarium. Open a skill to review its source and details.
stanfish06/skillquariumShowing 40 of 1,211 collected skills.
Standalone evaluation of an existing PDB directory with Proteina-Complexa. Use when the user wants to "evaluate PDB files", "re-fold these designs", "compute interface pAE", "compute i_pLDDT for a folder", "run AF2 / RF3 / ESMFold on my designs", "score…
First-time setup, environment configuration, and model-weight installation for Proteina-Complexa. Reach for this skill whenever the user says "set up complexa", "install complexa", "configure my environment file", "first-time setup", "what models do I have…
Use when launching Proteina-Complexa jobs on a remote SLURM cluster, including binder search, LaProteina design or training, multi-node runs, sbatch, remote GPU jobs, Hydra sweeps, rsync-to-cluster workflows, `--on-cluster`, grizzly or polar, and singleton…
Use this skill whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over generation/reward/evaluation knobs, or any "compare configurations" workflow. Trigger phrases…
Use this skill whenever the user wants to add, register, edit, list, show, or validate a Proteina-Complexa design target for any pipeline — protein binder (default), ligand binder, or AME / enzyme scaffolding. Triggers include "add a target", "define a new…
Vercel AI Gateway expert guidance. Use when configuring model routing, provider failover, cost tracking, or managing multiple AI providers through a unified API.
Generates professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical interpretation summary, pharmacogenomic alerts, and follow-up recommendations.
Generates professional clinical PDF reports in Spanish from WES (Whole Exome Sequencing) data with clinical interpretation, pharmacogenomic alerts, and follow-up recommendations.
Deterministic CRISPR screen hit ranking from local guide-level count tables
Operator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. Use this skill when the user needs to validate run inputs, generate pacsomatic-compliant samplesheets, prepare reproducible Nextflow launch artifacts, run locally or…
Publish and manage research papers on Hugging Face Hub. Supports creating paper pages, linking papers to models/datasets, claiming authorship, and generating professional markdown-based research articles.
Expert-thinking profile for Biomedical Engineer (device R&D / implants / biomechanics / regulatory (510(k), ISO 10993)): Reasons from ISO 14971 risk management, ISO 10993 biocompatibility matrices, ASTM F/ISO 14242 mechanical and wear testing, and FDA 510(k)…
Expert-thinking profile for Biomedical Imaging Scientist (clinical / research): Reasons from contrast mechanisms, the resolution-SNR-scan-time triangle, and measurement reliability through DICOM/BIDS pipelines, QIBA profiles, phantom QC (ACR, NEMA IQ,…
Expert-thinking profile for Biophysical Chemist (wet-lab / biophysics / calorimetry & surface methods / single-molecule / binding thermodynamics & kinetics): Reasons from free energy landscapes, binding equilibria (K_d, ΔG = ΔH − TΔS), and probe–system…
Expert-thinking profile for Biostatistician (clinical / computational / trial and omics biostatistics): Reasons from estimands, SAPs, and error budgets; aligns ICH E9(R1), CONSORT/STROBE, multiplicity, MMRM, Cox survival, causal DAGs, and GWAS FDR while…
Expert-thinking profile for Cellular Neuroscientist (wet-lab / patch-clamp electrophysiology / live-cell imaging / culture-slice-iPSC preparations / synaptic physiology): Treat the neuron as a cable with active channels, not a point integrator unless you have…
Expert-thinking profile for Developmental Psychologist (longitudinal cohorts / age- normed psychometrics / ToM & EF paradigms / looking-time methods / IRB assent (45 CFR 46 subpart D)): Reasons from developmental trajectories, measurement invariance, and…
Expert guidance for Geistdocs, Vercel's documentation template built with Next.js and Fumadocs — MDX authoring, configuration, AI chat, i18n, feedback, deployment. Use when creating documentation sites, configuring geistdocs, writing MDX content, or setting…
Quick install and deploy vLLM, start serving with a simple LLM, and test OpenAI API.
Zero-shot time series forecasting with Google's TimesFM foundation model. Use for any univariate time series (sales, sensors, energy, vitals, weather) without training a custom model. Supports CSV/DataFrame/array inputs with point forecasts and prediction…
Address actionable GitHub pull request review feedback. Use when the user wants to inspect unresolved review threads, requested changes, or inline review comments on a PR, then implement selected fixes. Use the GitHub app for PR metadata and flat comment…
Predict RNA secondary structure, MFE folding, base-pair probabilities, RNA-RNA interactions via ViennaRNA Python bindings. Pipeline: sequence → MFE → partition function and pair-probability matrix → dot-bracket → duplex. Use for siRNA/sgRNA targeting,…
Given an article DOI or PubMed ID, discover and download the genomics data files deposited by the authors (VCF, FASTA, H5AD, CSV, JSON, BAM, etc.) from public repositories such as GEO, ENA, Zenodo, Figshare, Dryad, and OSF.
Run read-only SQL against BigQuery public datasets with local result capture, cost safeguards, and reproducibility outputs.
Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing large-scale radiology (CT, MR, PET) and pathology datasets for AI training or research. No authentication required. Query by metadata, visualize in…
Add Pydantic Logfire observability to applications and send as much useful telemetry as possible. Use this skill whenever the user asks to "add logfire", "instrument with logfire", "add observability", "add tracing", "configure logfire", "add monitoring",…
Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral…
Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use when the user asks…
Classify germline variants from VCF/BCF files according to the ACMG/AMP 2015 28-criteria evidence framework and generate clinical-grade interpretation reports with per-variant evidence audit trails and ACMG SF v3.2 secondary findings screening.
Annotate VCF variants with Ensembl VEP, ClinVar, and gnomAD. Ranks variants by impact (HIGH/MODERATE/LOW/MODIFIER) and generates a reproducible report.
Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradient Boosting…
Patches past the barriers that stop a fuzzer making progress — checksum and hash verification, magic-value validation, time-based seeds, and other non-deterministic global state. Covers locating the blocking check, neutering it behind a fuzzing build flag,…
Expert-thinking profile for Environmental Policy Analyst (regulatory / benefit-cost / NEPA-ESA / climate policy economics): Reasons from statutory authority, baseline definition, and monetization boundaries through NEPA/ESA compliance, Circular A-4 RIAs, EPA…
Migrate a .NET 10 project or solution to .NET 11 and resolve all breaking changes. This is a MIGRATION skill — use it when upgrading from .NET 10 to .NET 11, NOT for writing new programs. USE FOR: upgrading TargetFramework from net10.0 to net11.0, fixing…
Multi-Omics Factor Analysis v2 (MOFA+) with mofapy2. Jointly decompose omics layers (scRNA, ATAC, proteomics, methylation) into latent factors capturing major variation. Multi-group designs. AnnData views → MOFA object → train → variance explained → correlate…
Audits GitHub Actions workflows for security vulnerabilities in AI agent integrations including Claude Code Action, Gemini CLI, OpenAI Codex, and GitHub AI Inference. Detects attack vectors where attacker-controlled input reaches AI agents running in CI/CD…
IBM quantum computing framework. Use when targeting IBM Quantum hardware, working with Qiskit Runtime for production workloads, or needing IBM optimization tools. Best for IBM hardware execution, quantum error mitigation, and enterprise quantum computing. For…
Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone. Use for ProteinMPNN, inverse folding, sequence design, backbone redesign, fixed chains/residues, omit_AAs, sampling temperature, soluble model, hosted NVIDIA…
Vercel CLI expert guidance. Use when deploying, managing environment variables, linking projects, viewing logs, managing domains, or interacting with the Vercel platform from the command line.
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex excels at out-of-core DataFrame operations, lazy evaluation, fast aggregations, efficient visualization of big data, and machine learning on…