Menu
Use when converting NCBI-style ASN.1 payloads into XML for downstream EDirect or XML-based processing.
Install with Codex or Claude Copy this prompt, paste it into Codex, Claude, or another assistant, and let it review the skill page and install it for you.
Based on SOC occupation classification
Use when joint-genotyping one or more germline gVCFs into a cohort VCF with GATK GenotypeGVCFs.
Use when running GATK HaplotypeCaller to emit per-sample germline variant calls or gVCFs from analysis-ready BAM/CRAM inputs.
Use when splitting mixed accession-like text into one lowercase token per line in EDirect-style text pipelines.
Use when converting ACE assembly files into SAM while preserving legacy ACE-specific padded or contig-sequence behavior.
Use when pretty-printing tab-delimited output with left, center, right, or decimal-aware numeric alignment in EDirect text workflows.
Use when masking columns or coordinate ranges in multiple-sequence alignments before downstream HMMER or alignment-processing steps.
| name | asn2xml |
| description | Use when converting NCBI-style ASN.1 payloads into XML for downstream EDirect or XML-based processing. |
| disable-model-invocation | true |
| user-invocable | true |
asn2xml < input.asn > output.xml/home/vimalinx/miniforge3/envs/bio/bin/asn2xmlxtract or other XML tooling.# 1) Convert an ASN.1 record to XML
asn2xml < record.asn > record.xml
# 2) Convert and inspect selected fields immediately
asn2xml < record.asn | xtract -pattern "*" -element "*" | sed -n '1,20p'
asn2xml through stdin redirection or a pipe.xtract, xml2json, or other downstream converters as needed.transmute -a2x, so the companion transmute binary must also be on PATH.--help or --version interface.