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Use when converting NCBI-style ASN.1 payloads into XML for downstream EDirect or XML-based processing.
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Baseado na classificação ocupacional SOC
| name | asn2xml |
| description | Use when converting NCBI-style ASN.1 payloads into XML for downstream EDirect or XML-based processing. |
| disable-model-invocation | true |
| user-invocable | true |
asn2xml < input.asn > output.xml/home/vimalinx/miniforge3/envs/bio/bin/asn2xmlxtract or other XML tooling.# 1) Convert an ASN.1 record to XML
asn2xml < record.asn > record.xml
# 2) Convert and inspect selected fields immediately
asn2xml < record.asn | xtract -pattern "*" -element "*" | sed -n '1,20p'
asn2xml through stdin redirection or a pipe.xtract, xml2json, or other downstream converters as needed.transmute -a2x, so the companion transmute binary must also be on PATH.--help or --version interface.Use when joint-genotyping one or more germline gVCFs into a cohort VCF with GATK GenotypeGVCFs.
Use when running GATK HaplotypeCaller to emit per-sample germline variant calls or gVCFs from analysis-ready BAM/CRAM inputs.
Use when splitting mixed accession-like text into one lowercase token per line in EDirect-style text pipelines.
Use when converting ACE assembly files into SAM while preserving legacy ACE-specific padded or contig-sequence behavior.
Use when pretty-printing tab-delimited output with left, center, right, or decimal-aware numeric alignment in EDirect text workflows.
Use when masking columns or coordinate ranges in multiple-sequence alignments before downstream HMMER or alignment-processing steps.