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SkillsMP has collected 34 skills from yuhangjiang22/chart-review-platform. Open a skill to review its source and details.
Showing 34 of 34 collected skills.
Asthma adherence task. Activates when extracting structured guideline-concordance signals from an asthma patient's chart — tier 0 (eligibility), tier 1 (control assessment: ACT score, exacerbation history, controller use), tier 2 (management: step therapy,…
LCN compensated-cirrhosis phenotype (Tapper 2025). From a patient's clinical notes and EHR structured data, extract the evidence that decides (Step 1) whether cirrhosis is established — recent biopsy alone, or >=2 of: imaging, liver stiffness, varices,…
Run the Playwright smoke suite against the Studio UI to catch regressions in the session workflow, phase gates, sidebar consistency, and cohort/agent rendering. Use after any UI change to client/src/ui/Workspace/ or before declaring a frontend task complete.…
ACTS Alzheimer's/dementia phenotyping — extract from a patient's clinical notes: impaired cognition (impaired_cognition), the documented APOE genotype (apoe_genotype → ε2/ε3/ε4 allele flags computed), postmenopausal status + last menstrual period, documented…
Drafts a new chart-review guideline package from a research objective and reference materials. Use when the user says "draft a guideline", "create a chart review protocol", "design a phenotype rubric", "I want to validate [condition]", "set up a chart review…
Extracts named entities from a biomedical / clinical text (PubMed abstract, EHR note, etc.) and normalizes each one to a concept_name from the BSO-AD ontology. Uses MCP tools on the `ner_mcp` server to enumerate the supported entity types, fetch the concept…
BSO-AD (Biological / Social / Other determinants of Alzheimer's Disease) NER scope skill. Activates when extracting entities under the BSO-AD ontology — 9 entity-type subtrees covering Demographic, Behavior / Lifestyle, Economic Stability, Education /…
Builds a chart-review guideline interactively, interviewing the reviewer in plain conversational text then drafting the guideline package once enough is known. Use when the user says "build a guideline with me", "help me design a chart review protocol", "I…
Calibrates a draft chart-review guideline before locking by computing per-criterion inter-rater reliability (Cohen's kappa) from blind dual-reviewer samples. Use when the user says "calibrate this draft", "is this guideline ready to lock", "compute kappa for…
Extract cancer histology type, distant-metastasis status, and local-recurrence status from a patient's clinical notes; disease extent is computed from the latter two. Evidence-cited. Triggers on: cancer type, histology, disease extent, metastatic, local…
Generates efficiency artifacts (keyword sets, code sets, note-type filters) from a locked guideline + its validated cohort. Use when the user says "codify the artifacts", "generate keyword sets", "extract code anchors from cohort", "speed up the agent for…
Analyzes a cohort of completed chart reviews under a locked guideline to detect drift, surface override patterns, and generate Role-C-style feedback. Use when the user says "what's drifting", "any patterns in recent overrides", "Role C analysis", "cohort…
Read-only review copilot for the human reviewer during chart-review validation. Use when the reviewer asks any question while validating a patient's already-drafted assessments — "summarize this patient", "why is this medium risk?", "show me the evidence for…
Identify evidence of depression from a patient's post-index clinical notes: explicit diagnosis, depressive symptoms, antidepressant use, psychiatry referral, and PHQ-9 severity. Tier and final Depression/No Depression decision are computed. Evidence-cited.…
Colorectal cancer (CRC) NCCN guideline-concordance review. Activate when assessing whether a CRC patient's care adhered to NCCN — molecular (MSI/MMR) testing, staging workup, adequate lymph-node harvest, and stage-appropriate adjuvant chemo / neoadjuvant…
Improves an existing chart-review guideline by sampling patient charts, comparing agent reviews against human ground truth, clustering disagreements, and proposing concrete edits. Use when the user says "improve this guideline", "the agent keeps getting…
LLM-as-judge for the calibration phase. Activates when the platform asks to "judge an agent disagreement", "analyze low-confidence answer", "pre-screen for the human reviewer", or "produce judge analysis". Inspects a single (patient, criterion) cell where two…
Lung cancer (NSCLC) molecular-testing guideline-concordance review. Activate when assessing whether an NSCLC patient's molecular workup adhered to NCCN — genomic testing performed, comprehensive genomic profiling vs single-gene, PD-L1 IHC,…
Drafts an academic-paper Methods section describing a chart-review study from a locked guideline plus cohort QA statistics. Use when the user says "write the methods section", "draft paper methods", "academic methods text", "methods paragraph for the…
LLM-as-judge for the NER calibration phase. Activates when the platform asks to "judge a span disagreement", "analyze low-confidence span", or "pre-screen a novel_candidate span" for the human reviewer. Inspects one span-pair where two NER agents disagreed…
Universal NER (named-entity recognition) reviewer for chart-review-platform-v2. Activates when an NER task asks the agent to extract entity spans from a patient's notes and normalize each span to a concept_name from the task's ontology. Composes with a…
PSMA PET/CT clinical-context chart review. Activate when assembling the prostate-cancer context a radiologist needs to interpret a PSMA PET/CT — Grade Group, PSA + trend, prior metastatic sites, treatment history (prostatectomy, radiation, ADT, ARPI, chemo,…
Score RUCAM (Roussel Uclaf Causality Assessment Method) for drug-induced liver injury (DILI) from EHR structured data + clinical notes. Triggers on: RUCAM, DILI causality, drug-induced liver injury, hepatotoxicity, R ratio, time to onset, rechallenge, liver…
Reviews a patient's electronic health record against a clinical phenotyping rubric (also called a chart-review guideline or abstraction protocol). Use whenever the user says "review this chart", "review this patient", "abstract this case", "is this lung…
T1D diabetes-type confirmation phenotype. From a patient's clinical notes and EHR structured data (OMOP conditions/drugs/measurements), extract the evidence that decides whether the patient is true/likely type 1 diabetes vs not T1D vs uncertain, and identify…
Look up ICD-10, LOINC, CPT, and SNOMED-CT codes; expand a parent code to its descendant set; map between code systems. Use during chart review when validating a coded value or expanding a study's inclusion code list.
Aggregate audit JSONLs across reviewed records and surface fields where override rates have shifted recently. Use to detect when a chart-review-guideline criterion is becoming systematically wrong and may need a guideline update.
Verify that a quoted clinical span actually appears verbatim in the source chart at the claimed location. Use to enforce evidence-grounded answers and reject hallucinated quotes during chart review.
Compute Cohen's kappa per criterion across two or more reviewers from the audit log of locked records. Use to measure agreement on chart-review-guideline application.
Search chart note text for terms or phrases; return hits with note_id and span offsets. Use when extracting evidence from a patient's notes during chart review, especially when looking for specific clinical concepts or codes.
Apply a new SKILL bundle SHA to past locked records by archiving each affected record and reopening it for re-review. Use when a guideline change requires re-evaluating previously locked decisions under the new rules.
Draft a v.next of the chart-review-guideline-skill when drift detection flags a criterion as needing revision. Use to mechanize Role C proposals from drift signals into a methodologist-reviewable patch.
Compute a per-field semantic diff between two SKILL bundle versions; report added, removed, changed, and unchanged criteria with payload-level diffs for guidance, gates, schemas, and derivations. Use to surface what changed between two locked task SHAs.
Extracts named entities from a biomedical / clinical text (PubMed abstract, EHR note, etc.) and normalizes each one to a concept_name from the BSO-AD ontology. Uses MCP tools on the `ner_mcp` server to enumerate the supported entity types, fetch the concept…