T32_oneill

Build the T32 grant proposal as PDF and/or Word. Supports full build, Word-only, PDF-only, or single-section Word export for collaborator review.

Full grant review pipeline — runs compliance checker, study section reviewer, and proofreader on the T32 proposal. Aggregates all results into a single summary report.

Compile the LaTeX manuscript. Runs latexmk (or multi-pass pdflatex + biber) from the project root and reports errors, warnings, and undefined references.

Challenge academic content with 5-7 specific pedagogical questions. Checks ordering, prerequisites, gaps, alternatives, notation conflicts, cognitive load, and standalone readiness. Works on slides, lecture notes, paper drafts, and assignments.

Run holistic pedagogical review on teaching materials — slides, lecture notes, assignments, or syllabi. Checks narrative arc, prerequisites, worked examples, notation clarity, and pacing.

Run the proofreading protocol on project files. Checks grammar, typos, overflow, consistency, and academic writing quality. Produces a report without editing files.

Run the R code review protocol on R scripts. Checks code quality, reproducibility, data.table conventions, domain correctness, and professional standards. Produces a report without editing files.

Run the main.r pipeline and verify all outputs exist with non-zero size. Use to check that the full analysis reproduces correctly.

Validate bibliography entries against citations in all project files. Find missing entries and unused references.