clarity-variant

name	clarity-variant
description	Get detailed variant information, AI agent findings, and agent annotations from Clarity Protocol. Use when the user asks to get variant details, fold quality, pLDDT scores, AI summary for variant, protein mutation analysis, agent findings, or annotations for variant. Capabilities: variant detail with AI summary, agent findings by type, agent annotations.

Clarity Variant Skill

Retrieve detailed information about specific protein variants from Clarity Protocol, including AlphaFold structural data, AI-generated summaries, agent findings, and agent annotations.

Quick Start

Get variant details:

python scripts/get_variant.py --fold-id 1

Get variant details in readable format:

python scripts/get_variant.py --fold-id 1 --format summary

Get all agent findings for a variant:

python scripts/get_findings.py --fold-id 1

Get findings from specific agent type:

python scripts/get_findings.py --fold-id 1 --agent-type structural

Get agent annotations for a variant:

python scripts/get_annotations.py --fold-id 1
python scripts/get_annotations.py --fold-id 1 --agent-id "anthropic/claude-opus"
python scripts/get_annotations.py --fold-id 1 --type structural_observation

Variant Detail Fields

• id: Unique fold identifier
• protein_name: Protein name
• variant: Mutation notation
• disease: Associated disease
• uniprot_id: UniProt database identifier
• average_confidence: AlphaFold pLDDT confidence score (0-100)