nf-core-skills

Run shared nf-core lint and policy checks via `prek run <hook-id>` or full `prek run --all-files` in this repo.

Run and interpret `nf-core pipelines lint` to validate a Nextflow pipeline against nf-core community guidelines. Use when the user wants to check pipeline compliance, fix lint failures, run specific lint tests, or configure `.nf-core.yml` lint overrides.

Create, lint, and modify nf-core pipelines following community standards. Use when the user is working on a Nextflow pipeline that lives under nf-core, mentions `nf-core create`, `nf-core lint`, or edits files like `main.nf`, `nextflow.config`, `nextflow_schema.json`, or anything under `conf/`, `workflows/`, or `subworkflows/local/` inside an nf-core pipeline.