nf-core-tools

name	nf-core-tools
description	Run shared nf-core lint and policy checks via `prek run <hook-id>` or full `prek run --all-files` in this repo.
license	MIT
metadata	{"author":"nf-core","version":"0.1.0"}

nf-core tools

When to use

• Need deterministic lint/policy checks across Codex, Claude, Cursor.
• Need to run one specific hook fast.
• Need strict nf-core guardrails for Nextflow edits.

Commands

prek run --all-files
prek run guard-nfcore-modules --all-files
prek run lint-schema --all-files
prek run check-param-drift --all-files
prek run lint-local-module --all-files
prek run check-nftest-exists --all-files
prek run check-changelog --all-files

Notes

• lint-schema and lint-local-module require nf-core CLI installed.
• Hooks fail hard on violations (non-zero exit).