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SkillsMP hat 13 Skills aus geneontology/gocam-agent gesammelt. Öffne einen Skill, um Quelle und Details zu prüfen.
Es werden 13 von 13 gesammelten Skills angezeigt.
This skill should be used when creating, editing, or validating GO-CAM (Gene Ontology Causal Activity Model) models. It provides comprehensive annotation guidelines for molecular functions, biological processes, cellular components, and causal relationships…
Quellsprache: Englisch
Search GO bioentities (genes, gene products, complexes) and their GO annotations directly from the GO database. Use to resolve MGI/MOD/ComplexPortal IDs, cross-check GO annotations independently of gocam search, or find MOD-specific gene product IDs needed in…
Quellsprache: Englisch
Independent blind evaluation of GO-CAM claims documents using Claude Explore subagents to read the PDFs. Reads expert_validation_claims.md and verifies every claim against primary PDFs from scratch, producing a structured evaluation report. Use after…
Quellsprache: Englisch
Independent blind evaluation of GO-CAM claims documents using Gemini. One Gemini instance per primary PDF reads the paper directly and returns PASS/FLAG/FAIL verdicts on every claim citing it. Use after gocam-claims-pipeline has generated its output. Always…
Quellsprache: Englisch
Generate a .drawio pathway diagram from a GO-CAM claims document. Use after completing the annotation pipeline (Phase 7) to produce agent-output/pathway_sketch.drawio. Reads shape styles and the Shape Palette page from workflow/network_template_draw.drawio.
Quellsprache: Englisch
Launches two parallel Gemini instances per paper to review GO-CAM claims from two complementary perspectives — a peer reviewer (scientific accuracy) and a GO-CAM curator (annotation correctness). Each receives the full claim in claims_template format and…
Quellsprache: Englisch
Run the full GO-CAM literature-backed annotation pipeline. Reads GO-CAM models (OWL/TTL), verifies all claims against primary research PDFs, and produces expert validation documents. Use when starting or continuing a GO-CAM curation project folder.
Quellsprache: Englisch
Fetch full-text articles and metadata from PubMed/PMC. Use when a PDF is missing from literature/ and you need the article text or abstract to verify a claim. Full text is only available for open-access PMC articles (~6 million).
Quellsprache: Englisch
Forensic claim-by-claim and comment-by-comment validation of GO-CAM annotation outputs against primary PDFs. Applies 5 strict peer-reviewer rules. Produces OK/WRONG/UNCERTAIN verdicts with corrections. Use after gocam-claims-pipeline has produced its outputs;…
Quellsprache: Englisch
Independent blind evaluation of GO-CAM claims documents. Reads an expert_validation_claims.docx (or .md) and verifies every claim against primary PDFs, producing a structured evaluation report. Use after gocam-claims-pipeline has generated its output.
Quellsprache: Englisch
Use whenever you need to look up gene/protein annotations (UniProt ID, GO MF/BP/CC terms, SynGO annotations, ECO evidence codes) or run the gocam-curator extraction pipeline. Provides the search command and pipeline commands for the gocam-curator CLI tool.
Quellsprache: Englisch
Use when starting a completely new GO-CAM model from scratch, deciding whether a GO-CAM is needed vs standard annotations, or following the official GO Consortium workflow for model creation. Covers the conceptual structure of GO-CAMs, when to use them, and…
Quellsprache: Englisch
Use whenever you need to access the GO-CAM store (Noctua). This is accomplished via an API called barista.
Quellsprache: Englisch