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benchmark-pii-recall

Benchmark an OpenMed PII model with synthetic gold spans and report label-aware exact-span and grapheme recall without emitting identifier surfaces. Use when an agent must compare a model, threshold, backend, or quantized artifact and enforce a recall floor before release.

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maziyarpanahi/openmed
Letzte Quellaktivität
27. Juli 2026 um 09:35
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Englisch
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680

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SKILL.md
Quellanweisungen · Schreibgeschützte Vorschau
name
benchmark-pii-recall
description
Benchmark an OpenMed PII model with synthetic gold spans and report label-aware exact-span and grapheme recall without emitting identifier surfaces. Use when an agent must compare a model, threshold, backend, or quantized artifact and enforce a recall floor before release.
# Benchmark PII recall Measure PII recall before optimizing F1, size, or latency. A missed direct identifier is a privacy failure even when aggregate F1 improves. ## Procedure 1. Build synthetic fixtures with exact offsets and canonical PII labels. 2. Include direct identifiers, boundary cases, languages/scripts, and the target device or quantization. 3. Run `extract_pii` at the candidate threshold. 4. Normalize prediction labels and score each document separately. 5. Aggregate counts only; do not persist raw text or identifier surfaces. 6. Fail the release when the recall floor or zero-critical-leak requirement is not met. ## Runnable synthetic benchmark Install the model runtime first with `python -m pip install "openmed[hf]"`. ```python from openmed import extract_pii from openmed.core.labels import normalize_label from openmed.eval import compute_character_recall, compute_exact_span_f1 MODEL = "OpenMed/OpenMed-PII-SuperClinical-Small-44M-v1" RECALL_FLOOR = 0.99 FIXTURES = [ { "text": ( "Call the synthetic clinic at 212-555-0198 or email " "demo.patient@example.test." ), "spans": [ ("PHONE", "212-555-0198"), ("EMAIL", "demo.patient@example.test"), ], }, { "text": ( "The synthetic callback number is 415-555-0136 and the contact " "address is sample.user@example.test." ), "spans": [ ("PHONE", "415-555-0136"), ("EMAIL", "sample.user@example.test"), ], }, ] true_positives = false_positives = false_negatives = 0 covered_graphemes = total_graphemes = 0 for fixture in FIXTURES: text = fixture["text"] gold = [] for label, surface in fixture["spans"]: start = text.index(surface) gold.append( {"start": start, "end": start + len(surface), "label": label} ) result = extract_pii( text, model_name=MODEL, confidence_threshold=0.5, lang="en", ) predicted = [ { "start": entity.start, "end": entity.end, "label": normalize_label(entity.label), } for entity in result.entities if entity.start is not None and entity.end is not None ] exact = compute_exact_span_f1(gold, predicted, source_text=text) recall = compute_character_recall(gold, predicted, source_text=text) true_positives += exact.true_positives false_positives += exact.false_positives false_negatives += exact.false_negatives covered_graphemes += int(recall.numerator) total_graphemes += int(recall.denominator) exact_recall = true_positives / max(true_positives + false_negatives, 1) grapheme_recall = covered_graphemes / max(total_graphemes, 1) print( { "documents": len(FIXTURES), "exact_span_recall": exact_recall, "grapheme_recall": grapheme_recall, "false_positives": false_positives, "false_negatives": false_negatives, } ) assert grapheme_recall >= RECALL_FLOOR, "PII recall floor not met" ``` ## Release gates - Require zero misses for critical direct identifiers even if aggregate recall passes. - Report per-label, language, script, section, and device slices. - Compare quantized and full-precision outputs; reject recall regressions. - Add hard negatives so over-redaction does not hide behind high recall. - Store fixture hashes, model identity, threshold, and aggregate counts only. - Keep DUA-gated corpora outside the repository and load them only from the user's approved location. ## Repository example Read [the policy and release-evidence walkthrough](../../examples/v16_policy_audit_release_gates.py) for PHI-free leakage metrics and audit evidence.
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