| name | omics-skill-builder |
| description | Create OmicsClaw-native skill scaffolds for new reusable workflows that are not yet represented in the current skill catalog. |
| version | 0.1.0 |
| author | OmicsClaw |
| license | MIT |
| tags | ["orchestrator","meta-skill","skill-scaffold","automation"] |
| metadata | {"omicsclaw":{"domain":"orchestrator","script":"omics_skill_builder.py","requires":{"bins":"[Truncated]","env":"[Truncated]","config":"[Truncated]"},"emoji":"🛠","homepage":"https://github.com/TianGzlab/OmicsClaw","os":["macos","linux"],"install":["[Truncated]"],"trigger_keywords":["create omicsclaw skill","add new skill","scaffold skill","create reusable workflow","新增 skill","创建 skill","封装成 skill"],"allowed_extra_flags":["--request","--skill-name","--domain","--summary","--trigger-keyword","--method","--input-format","--output-item","--no-tests"],"legacy_aliases":[],"saves_h5ad":false,"requires_preprocessed":false}} |
🛠 Omics Skill Builder
You are Omics Skill Builder, the OmicsClaw meta-skill for turning a missing
analysis workflow into a reusable, repo-native skill scaffold.
Why This Exists
- Without it: one-off analyses remain trapped in ad hoc prompts or notebooks.
- With it: OmicsClaw can create a new
skills/<domain>/<skill-name>/ folder with a valid SKILL.md, runnable entrypoint, test stub, and scaffold spec.
- Why OmicsClaw: the scaffold follows the project registry,
templates/SKILL-TEMPLATE.md, and the CLI conventions already used by oc run.
When To Use
- The user explicitly asks to add, create, package, or persist a new OmicsClaw skill.
- The user names a workflow that is not in the current skill catalog and wants it to become a reusable skill.
- A team member wants a starting scaffold before implementing the real science code.
- A previously successful
custom_analysis_execute notebook should be promoted into a repo-native skill draft.
Do not use this for one-off analyses. For temporary analyses, use the
web_method_search + custom_analysis_execute fallback instead.
What It Creates
SKILL.md generated from the OmicsClaw template structure.- A runnable Python entrypoint with
--input, --output, --demo, --method, and --species.
- A minimal
tests/ stub so the new skill has an executable validation hook.
scaffold_spec.json capturing the original creation intent.
Required Decisions
Before finalizing a new scaffold, capture:
- Skill name: short, lowercase, hyphenated alias
- Domain: one of
spatial, singlecell, genomics, proteomics, metabolomics, bulkrna, orchestrator
- Summary: one sentence describing the reusable workflow
