Format a Quarto or R Markdown report following APA 7th edition style. Covers apaquarto/papaja packages, title page, abstracts, citations, tables, figures, and reference formatting. Use when writing an academic paper in APA format, creating a psychology or social science research report, generating reproducible manuscripts with embedded analysis, or preparing a thesis or dissertation chapter.
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Format a Quarto or R Markdown report following APA 7th edition style. Covers apaquarto/papaja packages, title page, abstracts, citations, tables, figures, and reference formatting. Use when writing an academic paper in APA format, creating a psychology or social science research report, generating reproducible manuscripts with embedded analysis, or preparing a thesis or dissertation chapter.
Got: The chosen framework package installs successfully and is loadable with library(apaquarto) or library(papaja).
If fail: If installation fails due to missing system dependencies (e.g., LaTeX for PDF output), install TinyTeX first with quarto install tinytex. For GitHub installation failures, check that the remotes package is installed and that GitHub is accessible.
Step 2: Create Document (apaquarto)
Create manuscript.qmd:
---title:"Effects of Variable X on Outcome Y"shorttitle:"Effects of X on Y"author:-name:First
[, , ]
Author
corresponding:
true
orcid:
0000
-0000
-0000
-0000
email:
author@university.edu
affiliations:
-
name:
University
Name
department:
Department
of
Psychology
-
name:
Second
Author
affiliations:
-
name:
Other
University
abstract:
|
This study examined the relationship between X and Y.
Using a sample of N = 200 participants, we found...
Results are discussed in terms of theoretical implications.
keywords:
keyword1
keyword2
keyword3
bibliography:
references.bib
format:
apaquarto-docx:
default
apaquarto-pdf:
documentmode:
man
---
Got: File manuscript.qmd exists with valid YAML frontmatter containing title, shorttitle, author affiliations, abstract, keywords, bibliography reference, and APA-specific format options.
If fail: Verify YAML indentation is consistent (2 spaces) and that author: entries use the list format with name:, affiliations:, and corresponding: fields. Check that bibliography: points to an existing .bib file.
Step 3: Write APA Content
# Introduction
Previous research has established that... [@smith2023; @jones2022].
@smith2023 found significant effects of X on Y.
# Method## Participants
We recruited `r nrow(data)` participants (*M*~age~ = `r mean(data$age)`,
*SD* = `r sd(data$age)`).
## Materials
The study used the Measurement Scale [@author2020].
## Procedure
Participants completed... (see @fig-design for the study design).
# Results```{r}
#| label: fig-results
#| fig-cap: "Mean scores by condition with 95% confidence intervals."
#| fig-width: 6
#| fig-height: 4
ggplot(summary_data, aes(x = condition, y = mean, fill = condition)) +
geom_col() +
geom_errorbar(aes(ymin = ci_lower, ymax = ci_upper), width = 0.2) +
theme_apa()
```
A two-way ANOVA revealed a significant main effect of condition,
*F*(`r anova_result$df1`, `r anova_result$df2`) = `r anova_result$F`,
*p*`r format_pvalue(anova_result$p)`, $\eta^2_p$ = `r anova_result$eta`.
# Discussion
The findings support the hypothesis that...
# References
Got: Content follows APA section structure (Introduction, Method, Results, Discussion, References) with inline R code for statistics and proper cross-references using @fig- and @tbl- prefixes.
If fail: If inline R code does not render, verify backtick-r syntax is correct (`r expression`). If cross-references show as literal text, check that the referenced chunk labels use the correct prefix and that the chunk has a corresponding caption option.
Step 4: Format Tables in APA Style
#| label: tbl-descriptives#| tbl-cap: "Descriptive Statistics by Condition"
library(gt)
descriptive_table <- data |>
group_by(condition)|>
summarise(
M = mean(score),
SD = sd(score),
n = n())
gt(descriptive_table)|>
fmt_number(columns =c(M, SD), decimals =2)|>
cols_label(
condition ="Condition",
M ="*M*",
SD ="*SD*",
n ="*n*")
Got: Tables render with APA formatting: italicized column headers for statistical symbols, proper decimal alignment, and a descriptive caption above the table.
If fail: If gt table does not render in APA style, ensure gt package is installed and that cols_label() uses markdown-style italics (*M*, *SD*). For papaja users, use apa_table() instead of gt().
Step 5: Manage Citations
Create references.bib:
@article{smith2023,
author = {Smith, John A. and Jones, Mary B.},
title = {Effects of intervention on outcomes},
journal = {Journal of Psychology},
year = {2023},
volume = {45},
pages = {123--145},
doi = {10.1000/example}
}
Multiple: [@smith2023; @jones2022] -> (Jones, 2022; Smith & Jones, 2023)
Got:references.bib contains valid BibTeX entries with all required fields (author, title, year, journal) and citation keys match those used in the manuscript text.
If fail: Validate BibTeX syntax with an online validator or bibtool -d references.bib. Ensure citation keys in the text exactly match .bib keys (case-sensitive).
Step 6: Render
# Word document (common for journal submission)
quarto render manuscript.qmd --to apaquarto-docx
# PDF (for preprint or review)
quarto render manuscript.qmd --to apaquarto-pdf
Got: Properly formatted APA document with title page, running head, and correctly formatted references section.
If fail: For PDF rendering failures, verify TinyTeX is installed (quarto install tinytex). For DOCX output issues, check that apaquarto's Word template is accessible. If references do not appear, ensure the # References heading is present at the end of the document.
Validation
Title page formatted correctly (title, authors, affiliations, author note)
Abstract present with keywords
In-text citations match reference list
Tables and figures numbered correctly
Statistics formatted per APA (italicized, proper symbols)
References in APA 7th edition format
Page numbers and running head present (PDF)
Pitfalls
Inline R code formatting: Use backtick-r syntax for inline statistics, not hardcoded values
Citation key mismatches: Ensure .bib keys match exactly in the text
Figure placement: APA manuscripts typically place figures at the end; set documentmode: man
Missing CSL file: apaquarto includes the APA CSL; papaja users may need to specify csl: apa.csl
Special characters in abstracts: Avoid markdown formatting in the YAML abstract block
Related Skills
create-quarto-report - general Quarto document creation
