repo-research-writer

Generate publication-quality plots from data files or DataFrames

Analyzes a GitHub repository or local directory to extract structure, files, and research context

Assembles all manuscript sections into a complete manuscript with validation and metadata generation

Analyzes manuscript outline for journal suitability, recommends optimal journal, and fetches author guidelines

Performs adversarial critique of manuscripts, outlines, literature reviews, or other academic content against journal requirements and quality standards.

Analyzes the repository structure and generates a detailed manuscript outline based on target journal guidelines (Nature, PLOS, Bioinformatics).

Performs deep literature research on manuscript topics and generates a comprehensive one-page summary of background and related work with citations.

Use for complete end-to-end manuscript generation. Orchestrates all steps from repository analysis to final manuscript with validation gates, two-stage review, citation verification, and automated revision.

Drafts a specific manuscript section using repository data and citation indices. Enforces fact-checking via Python tools.

Extract figures and tables from analyzed repository and generate supplementary visualizations

Automatically revise manuscript based on critique reports using iterative refinement with convergence detection

Assembles complete manuscript from individual section files in journal-specified order