| name | biomni |
| description | Use when working from the local Biomni repository to run agent-style biomedical tasks or inspect Biomni's biomedical tool modules and examples. |
| allowed-tools | Bash, Python |
biomni
Workspace-local entry point for the Biomni repository at /home/vimalinx/Projects/bio_studio/repositories/active/Biomni. The repo is present, the top-level Python package can be imported by adding the repo to sys.path, and the README documents both agent-style usage (A1) and a large biomedical tool tree under biomni/tool/.
Quick Start
- Repository:
/home/vimalinx/Projects/bio_studio/repositories/active/Biomni
- Primary workflow: activate
biomni_e1, configure API keys, then use from biomni.agent import A1
- Fast local check:
python -c "import sys; sys.path.insert(0, '/home/vimalinx/Projects/bio_studio/repositories/active/Biomni'); import biomni; print(biomni.__file__)"
When To Use This Tool
- Running Biomni as a biomedical agent from the local repo
- Inspecting Biomni's tool modules for genomics, molecular biology, protocols, literature, and related domains
- Following the repo's own quick-start, profile-switching, or Gradio demo flows
- Auditing whether the current workspace is actually ready for Biomni execution
Common Patterns
cd /home/vimalinx/Projects/bio_studio/repositories/active/Biomni
