Synthos

引用三验 — 参考文献是否存在(L1) + 引用是否得当(L2) + 引用是否全面(L3)。三位一体验证管线，从DOI验真到语义审查到遗漏检测。

**触发条件**: 对一批论文（10-34 篇）批量处理 `step_quality_check.md` 中的 quality_score 并写入 `state.json`。

子skill | NotebookLM CLI全功能指南 — Q&A知识提取、内容生成(报告/视频/音频/信息图/幻灯片)、文献检索。响应paper-pipeline的P1阶段调用。

生产力工具 — Airtable、Google Workspace、Linear、Notion、Jupyter等。

Complete paper pipeline: retrieval, extraction, quality review, analysis, and publication.

双循环进化：内部反思(P0) + 外部吸收(P1)。Cross-project absorption methodology — multi-round cross-project comparison, active project tracking, self-expanding keyword discovery. 动灵驱动吸收(Entelechy-Driven Absorption v4.3).

并行竞速PDF下载引擎 — curl_cffi TLS指纹绕过 + Sci-Hub域轮换 + LibGen + MedData。依赖 tools/paper-manager/src/。

Deep PubMed/MEDLINE search via NCBI E-utilities — query construction, MeSH terms, batch retrieval, clinical query refinement.

直接调用子类别/技能名称即可。例如：`arxiv`、`bib-integrity-audit`、`research-ideation`。

Synthos 与 AKNE 之间双向桥接 — 论文目录规范化、技能连接、逆向边创建、Wiki 清理、自动守护重启、内容摘要注入、向量化补全。与 akne-maintenance（内部运维）和 akne-knowledge-manager（审计诊断）不同，本技能管具体的桥接操作。

Every cron run of autonomous-core-researcher after v31 API fix. Standardized pattern for scanning 5 rotation + 5 new directions per run.

Generate falsifiable, prioritised research hypotheses from gap analysis — with falsifiability tests, evidence matrices, clinical translation assessment, and composite scoring.

Configure, extend, or contribute to Hermes Agent — the open-source AI agent framework by Nous Research.

自主AI智能体编排 — 多Agent协作、委托任务、跨Agent通信。

**≥80%置信度 = 闭嘴执行。** 不输出推测文案、不给选项、不喊"开始自主执行"口号。用户看到的是执行结果，不是选择题。

元认知 — 自主执行阈值、记忆增强、记忆优化系统。

CRISP-DM Helix methodology — strict CV-fold-isolated preprocessing for clinical ML experiments on public datasets. Generates real, traceable L0.5-compliant data.

机器学习运维 — ODE建模、实验管理、模型训练、推理部署、模型架构。

Scan paper library for citation health: D8 (bib entry count), D10a (cite-to-bib match rate), orphans, zombies. Class of tasks: LaTeX reference integrity auditing.

论文质量深度审查引擎 — 从文献下载→内容分析→研究空白验证→科学假设评估→解决方法评估→文献引用质量评分→综合评分。

Directory index for knowledge-extraction: knowledge-extraction

GitHub工作流 — PR审查、Issue管理、仓库管理、CI/CD。

⚡ P0 自进化引擎。Synthos evolution engine v2.20 — 四态决策+硬收敛+GEPA反射分析+自动基准+Pareto优化+外部吸收+教训学习+黄金验证+自扩关键词+漂移检测+渐进披露+Git即记忆。Hooks注入+置信度评分+并行Agent审计+会话上下文注入+Prompt Snippets。

Audit `.bib` reference files across a paper library for:

多源学术论文检索：Semantic Scholar / PubMed / Crossref / OpenAlex / arXiv / bioRxiv。

Delegate coding to OpenAI Codex CLI — 主力编码代理。覆盖多节点profile配置、无PTY执行、Cron集成、多模型并行。

Cron任务运维：诊断error状态、修复脚本缺陷、验证连接性。覆盖cron job list分析、错误分类、脚本语法验证、prompt更新、vLLM多节点负载均衡。

DevOps运维 — Cron任务管理、看板编排、worker管理。

Daily Routine Automation - Automates the super-individual daily workflow: email check, code review, task management, research tracking, skill maintenance. All automated, all traceable.

Navigation index for the core research stack — 7 cognitive atoms, paper pipeline, research methodology, and AI/ML tools.

Personal Knowledge Management - Integrates 44 papers, 33 literature reviews, 90+ project outputs into structured searchable knowledge. Converts scattered step_*.md, reference_*.md, paper.tex files into a connected knowledge graph.

Proactive Discovery Engine - Automatically discovers new research opportunities, tracks trends, monitors competitors, and identifies gaps. Transforms the system from reactive to proactive.

Use `memo` to manage Apple Notes directly from the terminal. Notes sync across all Apple devices via iCloud.

Use `remindctl` to manage Apple Reminders directly from the terminal. Tasks sync across all Apple devices via iCloud.

Track Apple devices and AirTags via the FindMy.app on macOS. Since Apple doesn't

Use `imsg` to read and send iMessage/SMS via macOS Messages.app.

You have a `computer_use` tool that drives the Mac in the **background**.

Apple生态工具链 — macOS/iOS设备管理、提醒事项、备忘录、查找设备。

Analyze repositories for lines of code, language breakdown, file counts, and code-vs-comment ratios using `pygount`.

Complete GitHub workflow: auth, PR review, issue management, repo management, CI/CD, codebase inspection.