nextflow-io/agent-skills

migrate-nextflow-code

Migrate a Nextflow pipeline to new language patterns.

Idioma do texto original: inglês

create-workflow

INVOKE THIS SKILL IMMEDIATELY when user asks to: write/create/build a Nextflow pipeline or workflow, create any bioinformatics pipeline (RNA-seq, DNA-seq, variant calling, ChIP-seq, etc.), or compose/chain Nextflow modules (process or workflow modules) from…

Idioma do texto original: inglês

install-nextflow

Install or upgrade Nextflow on the user's machine. Use when the user wants to install Nextflow, check their current Nextflow version, upgrade Nextflow, or set up the prerequisites (Java 17+) needed to run Nextflow.

Idioma do texto original: inglês

run-module

Run Nextflow Registry modules natively using `nextflow module` commands. Use when running, listing, or getting info about Nextflow modules, including process modules (a single tool) and workflow modules (subworkflows that chain several modules).

Idioma do texto original: inglês

launch-workflow

Launch Nextflow pipeline executions on cloud and HPC clusters via Seqera Platform. Use when the user wants to run/launch/submit a pipeline on a cloud or cluster compute environment, configure a compute environment, push pipeline changes to GitHub before…

Idioma do texto original: inglês