菜单
Use when converting `Seq-entry` ASN.1/XML-like citation content into compact `CITATION` XML blocks for EDirect-style matching workflows.
用 Codex 或 Claude 帮你安装 复制这段 Prompt，粘贴到 Codex、Claude 或其他助手里，让它检查 Skill 页面并帮你完成安装。
基于 SOC 职业分类
| name | asn2ref |
| description | Use when converting `Seq-entry` ASN.1/XML-like citation content into compact `CITATION` XML blocks for EDirect-style matching workflows. |
| disable-model-invocation | true |
| user-invocable | true |
PATH=/home/vimalinx/miniforge3/envs/bio/bin:$PATH /home/vimalinx/miniforge3/envs/bio/bin/asn2ref < seq_entry.xml/home/vimalinx/miniforge3/envs/bio/bin/asn2refSeq-entry records.CITATION XML blocks.cit2pmid.# 1) Convert Seq-entry records into compact citation XML
PATH=/home/vimalinx/miniforge3/envs/bio/bin:$PATH \
/home/vimalinx/miniforge3/envs/bio/bin/asn2ref \
< seq_entry.xml
# 2) Pipe the result into downstream citation-matching logic
upstream_seq_entry_command | \
PATH=/home/vimalinx/miniforge3/envs/bio/bin:$PATH \
/home/vimalinx/miniforge3/envs/bio/bin/asn2ref
Seq-entry content that still contains publication metadata.asn2ref as a stdin-driven filter.CITATION XML for ACCN, FAUT, LAUT, TITL, JOUR, VOL, ISS, PAGE, and YEAR.xtract recipe; it depends on sibling EDirect tools being available on PATH.PAGE is normalized to the first page number only.Use when joint-genotyping one or more germline gVCFs into a cohort VCF with GATK GenotypeGVCFs.
Use when running GATK HaplotypeCaller to emit per-sample germline variant calls or gVCFs from analysis-ready BAM/CRAM inputs.
Use when splitting mixed accession-like text into one lowercase token per line in EDirect-style text pipelines.
Use when converting ACE assembly files into SAM while preserving legacy ACE-specific padded or contig-sequence behavior.
Use when pretty-printing tab-delimited output with left, center, right, or decimal-aware numeric alignment in EDirect text workflows.
Use when masking columns or coordinate ranges in multiple-sequence alignments before downstream HMMER or alignment-processing steps.