القائمة
Use when converting `Seq-entry` ASN.1/XML-like citation content into compact `CITATION` XML blocks for EDirect-style matching workflows.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
استنادا إلى تصنيف SOC المهني
Use when joint-genotyping one or more germline gVCFs into a cohort VCF with GATK GenotypeGVCFs.
Use when running GATK HaplotypeCaller to emit per-sample germline variant calls or gVCFs from analysis-ready BAM/CRAM inputs.
Use when splitting mixed accession-like text into one lowercase token per line in EDirect-style text pipelines.
Use when converting ACE assembly files into SAM while preserving legacy ACE-specific padded or contig-sequence behavior.
Use when pretty-printing tab-delimited output with left, center, right, or decimal-aware numeric alignment in EDirect text workflows.
Use when masking columns or coordinate ranges in multiple-sequence alignments before downstream HMMER or alignment-processing steps.
| name | asn2ref |
| description | Use when converting `Seq-entry` ASN.1/XML-like citation content into compact `CITATION` XML blocks for EDirect-style matching workflows. |
| disable-model-invocation | true |
| user-invocable | true |
PATH=/home/vimalinx/miniforge3/envs/bio/bin:$PATH /home/vimalinx/miniforge3/envs/bio/bin/asn2ref < seq_entry.xml/home/vimalinx/miniforge3/envs/bio/bin/asn2refSeq-entry records.CITATION XML blocks.cit2pmid.# 1) Convert Seq-entry records into compact citation XML
PATH=/home/vimalinx/miniforge3/envs/bio/bin:$PATH \
/home/vimalinx/miniforge3/envs/bio/bin/asn2ref \
< seq_entry.xml
# 2) Pipe the result into downstream citation-matching logic
upstream_seq_entry_command | \
PATH=/home/vimalinx/miniforge3/envs/bio/bin:$PATH \
/home/vimalinx/miniforge3/envs/bio/bin/asn2ref
Seq-entry content that still contains publication metadata.asn2ref as a stdin-driven filter.CITATION XML for ACCN, FAUT, LAUT, TITL, JOUR, VOL, ISS, PAGE, and YEAR.xtract recipe; it depends on sibling EDirect tools being available on PATH.PAGE is normalized to the first page number only.