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lamm-mit/scienceclawعرض ٤٠ من أصل ٢٩٢ skills مجمعة.
Retrosynthetic template relevance prediction using a locally deployed ASKCOS TorchServe service. Returns ranked precursor suggestions with confidence scores from 5 template sets (reaxys, pistachio, pistachio_ringbreaker, bkms_metabolic, reaxys_biocatalysis).…
لغة النص الأصلي: الإنجليزية
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems…
لغة النص الأصلي: الإنجليزية
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
لغة النص الأصلي: الإنجليزية
ToolUniverse workflow — Binder Discovery
لغة النص الأصلي: الإنجليزية
Computational molecular biology library (sequence I/O, alignment, phylogenetics). Input: FASTA/GenBank/PDB files you already have. Output: parsed sequences, alignments, phylogenetic trees, structural analysis. Does NOT search databases — invoking by topic…
لغة النص الأصلي: الإنجليزية
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
لغة النص الأصلي: الإنجليزية
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database…
لغة النص الأصلي: الإنجليزية
Search NCBI BLAST for sequence homology and find similar sequences in biological databases
لغة النص الأصلي: الإنجليزية
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
لغة النص الأصلي: الإنجليزية
Playwright-based browser automation for scraping JavaScript-rendered scientific databases
لغة النص الأصلي: الإنجليزية
ToolUniverse workflow — Cancer Variant Interpretation
لغة النص الأصلي: الإنجليزية
Rank peptide variants using stability heuristics and hotspot protection; emit top candidates.
لغة النص الأصلي: الإنجليزية
Look up chemicals in CAS Common Chemistry (name, CAS RN, SMILES, InChI; ~500k compounds)
لغة النص الأصلي: الإنجليزية
Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your…
لغة النص الأصلي: الإنجليزية
Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.
لغة النص الأصلي: الإنجليزية
Small-molecule drug lookup by exact drug name or ChEMBL ID. Query MUST be a single drug name or ID — 1 to 3 words maximum. Valid examples: 'sotorasib', 'imatinib', 'ibrutinib', 'CHEMBL25', 'AMG 510'. If the topic is 'sotorasib KRAS G12C', the correct query is…
لغة النص الأصلي: الإنجليزية
ToolUniverse workflow — Chemical Compound Retrieval
لغة النص الأصلي: الإنجليزية
ToolUniverse workflow — Chemical Safety
لغة النص الأصلي: الإنجليزية
Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use…
لغة النص الأصلي: الإنجليزية
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify…
لغة النص الأصلي: الإنجليزية
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with…
لغة النص الأصلي: الإنجليزية
ToolUniverse workflow — Clinical Guidelines
لغة النص الأصلي: الإنجليزية
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates,…
لغة النص الأصلي: الإنجليزية
ToolUniverse workflow — Clinical Trial Design
لغة النص الأصلي: الإنجليزية
ToolUniverse workflow — Clinical Trial Matching
لغة النص الأصلي: الإنجليزية
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.
لغة النص الأصلي: الإنجليزية
Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.
لغة النص الأصلي: الإنجليزية
Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.
لغة النص الأصلي: الإنجليزية
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
لغة النص الأصلي: الإنجليزية
Compute per-position conservation/entropy for an aligned peptide MSA (aligned sequences).
لغة النص الأصلي: الإنجليزية
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
لغة النص الأصلي: الإنجليزية
ToolUniverse workflow — Crispr Screen Analysis
لغة النص الأصلي: الإنجليزية
Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core…
لغة النص الأصلي: الإنجليزية
Transform scientific findings into compelling research narratives for papers, grants, and presentations
لغة النص الأصلي: الإنجليزية
Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public datasets available…
لغة النص الأصلي: الإنجليزية
Python cheminformatics library (RDKit wrapper). Input: SMILES strings you already possess. Output: computed molecular properties, fingerprints, conformers, clustering. Does NOT retrieve compounds from any database — querying by topic name returns only a…
لغة النص الأصلي: الإنجليزية
Create scientific plots and visualizations using matplotlib and seaborn
لغة النص الأصلي: الإنجليزية
Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet benchmarks. Best for quick experiments with pre-trained…
لغة النص الأصلي: الإنجليزية
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
لغة النص الأصلي: الإنجليزية
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational…
لغة النص الأصلي: الإنجليزية