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SkillsMP hat 292 Skills aus lamm-mit/scienceclaw gesammelt. Öffne einen Skill, um Quelle und Details zu prüfen.
lamm-mit/scienceclawEs werden 40 von 292 gesammelten Skills angezeigt.
Retrosynthetic template relevance prediction using a locally deployed ASKCOS TorchServe service. Returns ranked precursor suggestions with confidence scores from 5 template sets (reaxys, pistachio, pistachio_ringbreaker, bkms_metabolic, reaxys_biocatalysis).…
Quellsprache: Englisch
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems…
Quellsprache: Englisch
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Quellsprache: Englisch
ToolUniverse workflow — Binder Discovery
Quellsprache: Englisch
Computational molecular biology library (sequence I/O, alignment, phylogenetics). Input: FASTA/GenBank/PDB files you already have. Output: parsed sequences, alignments, phylogenetic trees, structural analysis. Does NOT search databases — invoking by topic…
Quellsprache: Englisch
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
Quellsprache: Englisch
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database…
Quellsprache: Englisch
Search NCBI BLAST for sequence homology and find similar sequences in biological databases
Quellsprache: Englisch
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
Quellsprache: Englisch
Playwright-based browser automation for scraping JavaScript-rendered scientific databases
Quellsprache: Englisch
ToolUniverse workflow — Cancer Variant Interpretation
Quellsprache: Englisch
Rank peptide variants using stability heuristics and hotspot protection; emit top candidates.
Quellsprache: Englisch
Look up chemicals in CAS Common Chemistry (name, CAS RN, SMILES, InChI; ~500k compounds)
Quellsprache: Englisch
Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your…
Quellsprache: Englisch
Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.
Quellsprache: Englisch
Small-molecule drug lookup by exact drug name or ChEMBL ID. Query MUST be a single drug name or ID — 1 to 3 words maximum. Valid examples: 'sotorasib', 'imatinib', 'ibrutinib', 'CHEMBL25', 'AMG 510'. If the topic is 'sotorasib KRAS G12C', the correct query is…
Quellsprache: Englisch
ToolUniverse workflow — Chemical Compound Retrieval
Quellsprache: Englisch
ToolUniverse workflow — Chemical Safety
Quellsprache: Englisch
Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use…
Quellsprache: Englisch
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify…
Quellsprache: Englisch
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with…
Quellsprache: Englisch
ToolUniverse workflow — Clinical Guidelines
Quellsprache: Englisch
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates,…
Quellsprache: Englisch
ToolUniverse workflow — Clinical Trial Design
Quellsprache: Englisch
ToolUniverse workflow — Clinical Trial Matching
Quellsprache: Englisch
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.
Quellsprache: Englisch
Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.
Quellsprache: Englisch
Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.
Quellsprache: Englisch
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
Quellsprache: Englisch
Compute per-position conservation/entropy for an aligned peptide MSA (aligned sequences).
Quellsprache: Englisch
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
Quellsprache: Englisch
ToolUniverse workflow — Crispr Screen Analysis
Quellsprache: Englisch
Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core…
Quellsprache: Englisch
Transform scientific findings into compelling research narratives for papers, grants, and presentations
Quellsprache: Englisch
Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public datasets available…
Quellsprache: Englisch
Python cheminformatics library (RDKit wrapper). Input: SMILES strings you already possess. Output: computed molecular properties, fingerprints, conformers, clustering. Does NOT retrieve compounds from any database — querying by topic name returns only a…
Quellsprache: Englisch
Create scientific plots and visualizations using matplotlib and seaborn
Quellsprache: Englisch
Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet benchmarks. Best for quick experiments with pre-trained…
Quellsprache: Englisch
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
Quellsprache: Englisch
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational…
Quellsprache: Englisch