القائمة
Use when searching a local NCBI EDirect archive/postings index with Boolean, title, word, or pair queries inside the `x*` local-cache workflow.
يُحدَّد Prompt الذي يراجع المصدر أولًا بشكل افتراضي. يمكنك التبديل إلى أمر مباشر أو تنزيل نسخة محلية.
اقرأ SKILL.md وأي ملفات مرافقة يعرضها SkillsMP قبل أن تقرر التثبيت.
التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.
يتجاوز الأمر المباشر Prompt المخصّص للمراجعة. افحص المصدر قبل تشغيله.
npx skills add https://github.com/vimalinx/bio-agent --skill xsearchيبقى الأمر في سطر واحد. مرّر أفقيًا لمراجعته كاملًا قبل النسخ.
تفضّل نسخة محلية؟ نزّل الملفات المتاحة حاليًا لدى SkillsMP.
عرض SKILL.md
استنادا إلى تصنيف SOC المهني
| name | xsearch |
| description | Use when searching a local NCBI EDirect archive/postings index with Boolean, title, word, or pair queries inside the `x*` local-cache workflow. |
| disable-model-invocation | true |
| user-invocable | true |
Local search front-end built on xcommon.sh plus rchive. It defaults to pubmed, supports -query, -match, -exact, -title, -words, and -pairs, and usually emits an ENTREZ_DIRECT wrapper unless you switch to -raw or use one of the direct rchive lookup modes.
xsearch -query "<search terms>"/home/vimalinx/miniforge3/envs/bio/bin/xsearchEDIRECT_LOCAL_ARCHIVEENTREZ_DIRECT UID set for downstream xlink, xfilter, or stepsxfetchAND, NOT, [TREE], or [YEAR]-title, -match, -exact, -words, or -pairs# Boolean query against the local archive
export EDIRECT_LOCAL_ARCHIVE=/path/to/local/archive
xsearch -db pubmed -query 'C14.907.617.812* [TREE] AND 2015:2018 [YEAR]'
# Title lookup
export EDIRECT_LOCAL_ARCHIVE=/path/to/local/archive
xsearch -title 'Genetic Control of Biochemical Reactions in Neurospora.'
# Emit raw UIDs instead of ENTREZ_DIRECT XML
export EDIRECT_LOCAL_ARCHIVE=/path/to/local/archive
xsearch -raw -query 'CRISPR AND 2024 [YEAR]'
EDIRECT_LOCAL_ARCHIVE at a valid local archive/postings root.-query for general Boolean search, -title/-match/-exact for title-style matching, or -words/-pairs for tokenized title scoring.x* tools, or add -raw when the next stage expects plain UID lines.esearch replacement.-h/-help are safe and show usage examples; -version prints the EDirect version string.EDIRECT_LOCAL_ARCHIVE failed with Must supply path to local data by setting EDIRECT_LOCAL_ARCHIVE environment variable followed by Unable to get folder Postings for database pubmed.-query wraps UID hits in ENTREZ_DIRECT XML unless -raw is set; -match, -exact, and -title call rchive directly instead.-words and -pairs tokenize the query through word-at-a-time and filter-stop-words, then rank title hits with sort-uniq-count-rank -n.-db, the script defaults to pubmed.