mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- - Page 7

spatial-trajectory

Trajectory inference and pseudotime analysis using DPT, Monocle3, Slingshot, scVelo for RNA velocity, and PAGA for abstracted graph analysis.

sc-velocity

RNA velocity analysis for single-cell omics. Wraps scVelo to quantify spliced/unspliced kinetics, latent time, velocity graphs, and driver gene ranking with optional dynamical mode fitting.

cjk-viz

CJK (中日韩) 字体检测与 matplotlib 配置。任何涉及中文标签、标题、图例的 可视化任务启动前必须先执行本 skill 的字体检测流程，确保不会出现方块乱码。 适用于 matplotlib / seaborn / plotly 静态导出等场景。

Source text: Chinese

charls-reproduce

CHARLS (China Health and Retirement Longitudinal Study) database-specific knowledge for reproducing published papers. Use when reproducing or analyzing papers that use CHARLS data, including variable mapping from harmonized to raw questionnaire items,…

Source text: Mixed languages

paper-reproduce

Systematic methodology for reproducing published academic papers using provided data. Use when the user asks to reproduce, replicate, or verify results from a published paper, including sample selection, descriptive statistics, regression analyses, and…

Source text: Mixed languages

biomed-dispatch

Dispatch biomedical research and data analysis tasks to Claude Code with K-Dense Scientific Skills. Use this skill when the user asks to run any bioinformatics, genomics, drug discovery, clinical data analysis, proteomics, multi-omics, medical imaging, or…

Source text: Mixed languages

feishu-rich-card

Send rich interactive cards with embedded images in Feishu group chats. Use when reporting progress, sharing analysis results, or presenting any content that benefits from mixed text+image layout in Feishu. Combines SVG UI templates (or matplotlib/PIL charts)…

Source text: Chinese

svg-ui-templates

Generate professional SVG UI panels for structured information display. Use when presenting lists, task checklists, pipeline/dependency status diagrams, or rich-text report layouts as SVG images. Covers four templates - list-panel, checklist-panel,…

bioinformatics-singlecell

Single-cell and multi-omic analysis for hematology, oncology, and translational biology. Use when working with scRNA-seq, CITE-seq, scATAC-seq, multiome, trajectory analysis, batch correction, cell typing, differential expression, or publication-ready figures…

biomedical-rag-citation-pipelines

Design citation-grounded biomedical retrieval and generation systems for literature-heavy assistants. Use when building or improving PubMed or PMC search pipelines, hybrid retrieval, claim-to-citation validation, evidence-aware answer synthesis, or evaluation…

computational-software-development

Full-stack computational software development for biomedical and life science applications. Use when building or refactoring research software, LLM-enabled analysis platforms, scientific web apps, data pipelines, RAG systems, evaluation harnesses, or…

mpn-research-assistant

Myeloproliferative neoplasm research support across JAK2, CALR, MPL, PPM1D, megakaryocyte biology, fibrosis, clonal evolution, and translational oncology. Use when synthesizing MPN literature, structuring hypotheses, interpreting MPN datasets, summarizing…

ngs-analysis

Practical next-generation sequencing analysis support for bulk RNA-seq, variant calling, alignment, preprocessing, and workflow assembly. Use when working from FASTQ or BAM/VCF inputs, setting up QC, choosing aligners or quantifiers, organizing reproducible…

skill-library-maintainer

Maintain and improve large skill repositories with consistent metadata, lean SKILL.md bodies, reusable references, and validation discipline. Use when auditing skill collections, normalizing frontmatter, splitting oversized skills into references, adding new…

ai-safety-auditor

Validates clinical AI outputs for safety, bias, and hallucination risks before delivery to end-users or clinicians.

safety-monitor

Safety Monitor

wearable-analysis-agent

Analyzes longitudinal wearable sensor data (heart rate, activity, sleep) to detect anomalies and provide personalized health insights.

liquid-biopsy-analytics-agent

Comprehensive analysis of liquid biopsy data (ctDNA, CTCs) for cancer detection, MRD monitoring, and response tracking.

tumor-mutational-burden-agent

Calculates and harmonizes Tumor Mutational Burden (TMB) across platforms to predict immunotherapy response.

pharmacogenomics-agent

AI-driven pharmacogenomic analysis for precision dosing and adverse event prediction using multi-omics data.

swarm-orchestrator

Run Agent Swarms

memory-management

Two-tier memory system that makes Claude a true workplace collaborator. Decodes shorthand, acronyms, nicknames, and internal language so Claude understands requests like a colleague would. CLAUDE.md for working memory, memory/ directory for the full knowledge…

task-management

Simple task management using a shared TASKS.md file. Reference this when the user asks about their tasks, wants to add/complete tasks, or needs help tracking commitments.

knowledge-synthesis

Combines search results from multiple sources into coherent, deduplicated answers with source attribution. Handles confidence scoring based on freshness and authority, and summarizes large result sets effectively.

search-strategy

Query decomposition and multi-source search orchestration. Breaks natural language questions into targeted searches per source, translates queries into source-specific syntax, ranks results by relevance, and handles ambiguity and fallback strategies.

source-management

Manages connected MCP sources for enterprise search. Detects available sources, guides users to connect new ones, handles source priority ordering, and manages rate limiting awareness.

radgpt-radiology-reporter

Radiology Reporter

crispr-guide-design

Guide foundry

trialgpt-matching

Trial shortlist

mage-antibody-generator

Ab seq forge

antibody-design-agent

An advanced agent for de novo antibody design and optimization using state-of-the-art protein language models (MAGE, RFdiffusion).

variant-interpretation-acmg

Classifies genetic variants according to ACMG (American College of Medical Genetics) guidelines.

varcadd-pathogenicity

Variant Scorer

biomedical-data-analysis

Omics data forge

kragen-knowledge-graph

Graph-RAG Solver

leads-literature-mining

Review Automator

biomni-research-agent

Bio-Research Generalist

biomaster-workflows

Pipeline maestro

cellagent-annotation

Cell tagger

compbioagent-explorer

scRNA-seq Explorer