swaruplab/operon - Página 10

cellular-senescence-agent

AI-powered analysis of cellular senescence for aging research, cancer therapy response, and senolytic drug development.

Idioma del texto original: inglés

chatehr-clinician-assistant

EHR Chat Assistant

Idioma del texto original: inglés

chematagent-drug-discovery

Chemical Lab Agent

Idioma del texto original: inglés

chemcrow-drug-discovery

An LLM chemistry agent with expert-designed tools for organic synthesis, drug discovery, and materials design.

Idioma del texto original: inglés

chemical-property-lookup

Compute RDKit-driven molecular properties (MW, logP, TPSA, QED, Lipinski) for a SMILES string to support downstream drug discovery tools.

Idioma del texto original: inglés

chemist-analyst

Analyzes events through chemistry lens using molecular structure, reaction mechanisms, thermodynamics, kinetics, and analytical techniques (spectroscopy, chromatography, mass spectrometry). Provides insights on chemical processes, material properties,…

Idioma del texto original: inglés

chemistry-agent

Autonomous chemical synthesis & analysis

Idioma del texto original: inglés

clinical-nlp-extractor

Extracts medical entities (Diseases, Medications, Procedures) from unstructured clinical text using regex and simple rules (or LLM wrappers).

Idioma del texto original: inglés

clinical-note-summarization

Structure raw clinical notes into SOAP-format summaries with explicit contradictions, missing data, and ICD-linked assessments using the provided prompt + usage script.

Idioma del texto original: inglés

crispr-guide-design

Guide foundry

Idioma del texto original: inglés

crispr-offtarget-predictor

Predicts potential off-target sites for a given sgRNA sequence using mismatch analysis.

Idioma del texto original: inglés

cryoem-ai-drug-design-agent

AI-powered integration of cryo-EM structural data with generative AI and molecular dynamics for structure-based drug design targeting flexible proteins and membrane complexes.

Idioma del texto original: inglés

ctdna-dynamics-mrd-agent

AI-powered circulating tumor DNA dynamics analysis for molecular residual disease detection, treatment response monitoring, and early relapse prediction using liquid biopsy.

Idioma del texto original: inglés

data-visualization-biomedical

Publication-quality visualizations for biomedical and genomics data. Use when creating volcano plots, heatmaps, UMAP plots, dot plots, survival curves, forest plots, or multi-panel figures. Includes scanpy, matplotlib, seaborn, plotly workflows with…

Idioma del texto original: inglés

deep-visual-proteomics-agent

AI-driven integration of cellular imaging, laser microdissection, and ultra-sensitive mass spectrometry for spatially-resolved single-cell proteomics.

Idioma del texto original: inglés

digital-twin-clinical-agent

AI-powered patient digital twin creation for clinical trial simulation, treatment outcome prediction, and personalized medicine using real-world data and multi-omics integration.

Idioma del texto original: inglés

drug-interaction-checker

Checks for potential drug-drug interactions (DDIs) between a list of medications.

Idioma del texto original: inglés

ehr-fhir-integration

Provides comprehensive tools for working with Electronic Health Records (EHR) using the HL7 FHIR standard.

Idioma del texto original: inglés

epigenomics-methylgpt-agent

AI-powered DNA methylation analysis using MethylGPT foundation models for epigenomic profiling, differential methylation detection, and cancer epigenome characterization.

Idioma del texto original: inglés

gene-panel-design-agent

AI-powered design of targeted gene panels for clinical and research applications including cancer diagnostics, pharmacogenomics, and rare disease testing.

Idioma del texto original: inglés

gwas-lookup

Federated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, eQTL Catalogue, and more.

Idioma del texto original: inglés

immune-checkpoint-combination-agent

AI-powered analysis for predicting optimal immune checkpoint inhibitor combinations based on tumor microenvironment, biomarkers, and molecular profiling.

Idioma del texto original: inglés

long-read-sequencing-agent

AI-powered analysis of long-read sequencing data (PacBio, ONT) for structural variant detection, isoform discovery, epigenetic modifications, and de novo assembly.

Idioma del texto original: inglés

microbiome-cancer-agent

AI-powered analysis of microbiome-cancer interactions including tumor microbiome profiling, immunotherapy response prediction, and microbiome-targeted therapeutic opportunities.

Idioma del texto original: inglés

molecular-glue-discovery-agent

AI-powered molecular glue discovery for targeted protein degradation, enabling neo-substrate recruitment and undruggable target degradation through E3 ligase interface modulation.

Idioma del texto original: inglés

molecule-evolution-agent

Evolve Molecules

Idioma del texto original: inglés

multimodal-medical-imaging

Analyzes medical images (X-ray, MRI, CT) using multimodal LLMs to identify anomalies and generate reports.

Idioma del texto original: inglés

nicheformer-spatial-agent

Foundation model-powered spatial transcriptomics analysis leveraging 53M+ spatially resolved cells for cellular architecture modeling and tissue niche discovery.

Idioma del texto original: inglés

nk-cell-therapy-agent

AI-powered NK cell therapy design for cancer immunotherapy including CAR-NK engineering, memory-like NK generation, and KIR/HLA matching optimization.

Idioma del texto original: inglés

organoid-drug-response-agent

AI-powered analysis of patient-derived organoid (PDO) drug screening for personalized oncology treatment selection and biomarker discovery.

Idioma del texto original: inglés

pan-cancer-multiomics-agent

AI-powered pan-cancer analysis integrating genomic, transcriptomic, proteomic, and epigenomic data for cancer subtyping, driver identification, and cross-cancer pattern discovery.

Idioma del texto original: inglés

pharmacogenomics-agent

AI-driven pharmacogenomic analysis for precision dosing and adverse event prediction using multi-omics data.

Idioma del texto original: inglés

precision-oncology-agent

Fuse genomic variants, pathology findings, and clinical context to draft evidence-linked therapy options for tumor board review.

Idioma del texto original: inglés

protein-structure-prediction

Predicts 3D protein structures from amino acid sequences using ESMFold or AlphaFold3 (mock).

Idioma del texto original: inglés

rna-velocity-agent

AI-powered RNA velocity analysis for predicting cellular state transitions, differentiation trajectories, and dynamic gene regulation from single-cell RNA sequencing data.

Idioma del texto original: inglés

scrna-qc

Execute the MAD-based single-cell RNA-seq QC workflow (scripts + Python API) to filter low-quality cells and emit reports plus filtered AnnData files.

Idioma del texto original: inglés

single-cell-rna-qc

Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or…

Idioma del texto original: inglés

spatial-agent

An agent that interprets spatial transcriptomics data to propose mechanistic hypotheses and analyze tissue organization.

Idioma del texto original: inglés

spatial-epigenomics-agent

AI-powered spatial epigenomics analysis combining chromatin accessibility, histone modifications, and DNA methylation with spatial coordinates for tissue architecture mapping.

Idioma del texto original: inglés

spatial-transcriptomics-agent

Spatial analyst

Idioma del texto original: inglés