swaruplab/operon - Página 10

cellular-senescence-agent

AI-powered analysis of cellular senescence for aging research, cancer therapy response, and senolytic drug development.

Idioma do texto original: inglês

chatehr-clinician-assistant

EHR Chat Assistant

Idioma do texto original: inglês

chematagent-drug-discovery

Chemical Lab Agent

Idioma do texto original: inglês

chemcrow-drug-discovery

An LLM chemistry agent with expert-designed tools for organic synthesis, drug discovery, and materials design.

Idioma do texto original: inglês

chemical-property-lookup

Compute RDKit-driven molecular properties (MW, logP, TPSA, QED, Lipinski) for a SMILES string to support downstream drug discovery tools.

Idioma do texto original: inglês

chemist-analyst

Analyzes events through chemistry lens using molecular structure, reaction mechanisms, thermodynamics, kinetics, and analytical techniques (spectroscopy, chromatography, mass spectrometry). Provides insights on chemical processes, material properties,…

Idioma do texto original: inglês

chemistry-agent

Autonomous chemical synthesis & analysis

Idioma do texto original: inglês

clinical-nlp-extractor

Extracts medical entities (Diseases, Medications, Procedures) from unstructured clinical text using regex and simple rules (or LLM wrappers).

Idioma do texto original: inglês

clinical-note-summarization

Structure raw clinical notes into SOAP-format summaries with explicit contradictions, missing data, and ICD-linked assessments using the provided prompt + usage script.

Idioma do texto original: inglês

crispr-guide-design

Guide foundry

Idioma do texto original: inglês

crispr-offtarget-predictor

Predicts potential off-target sites for a given sgRNA sequence using mismatch analysis.

Idioma do texto original: inglês

cryoem-ai-drug-design-agent

AI-powered integration of cryo-EM structural data with generative AI and molecular dynamics for structure-based drug design targeting flexible proteins and membrane complexes.

Idioma do texto original: inglês

ctdna-dynamics-mrd-agent

AI-powered circulating tumor DNA dynamics analysis for molecular residual disease detection, treatment response monitoring, and early relapse prediction using liquid biopsy.

Idioma do texto original: inglês

data-visualization-biomedical

Publication-quality visualizations for biomedical and genomics data. Use when creating volcano plots, heatmaps, UMAP plots, dot plots, survival curves, forest plots, or multi-panel figures. Includes scanpy, matplotlib, seaborn, plotly workflows with…

Idioma do texto original: inglês

deep-visual-proteomics-agent

AI-driven integration of cellular imaging, laser microdissection, and ultra-sensitive mass spectrometry for spatially-resolved single-cell proteomics.

Idioma do texto original: inglês

digital-twin-clinical-agent

AI-powered patient digital twin creation for clinical trial simulation, treatment outcome prediction, and personalized medicine using real-world data and multi-omics integration.

Idioma do texto original: inglês

drug-interaction-checker

Checks for potential drug-drug interactions (DDIs) between a list of medications.

Idioma do texto original: inglês

ehr-fhir-integration

Provides comprehensive tools for working with Electronic Health Records (EHR) using the HL7 FHIR standard.

Idioma do texto original: inglês

epigenomics-methylgpt-agent

AI-powered DNA methylation analysis using MethylGPT foundation models for epigenomic profiling, differential methylation detection, and cancer epigenome characterization.

Idioma do texto original: inglês

gene-panel-design-agent

AI-powered design of targeted gene panels for clinical and research applications including cancer diagnostics, pharmacogenomics, and rare disease testing.

Idioma do texto original: inglês

gwas-lookup

Federated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, eQTL Catalogue, and more.

Idioma do texto original: inglês

immune-checkpoint-combination-agent

AI-powered analysis for predicting optimal immune checkpoint inhibitor combinations based on tumor microenvironment, biomarkers, and molecular profiling.

Idioma do texto original: inglês

long-read-sequencing-agent

AI-powered analysis of long-read sequencing data (PacBio, ONT) for structural variant detection, isoform discovery, epigenetic modifications, and de novo assembly.

Idioma do texto original: inglês

microbiome-cancer-agent

AI-powered analysis of microbiome-cancer interactions including tumor microbiome profiling, immunotherapy response prediction, and microbiome-targeted therapeutic opportunities.

Idioma do texto original: inglês

molecular-glue-discovery-agent

AI-powered molecular glue discovery for targeted protein degradation, enabling neo-substrate recruitment and undruggable target degradation through E3 ligase interface modulation.

Idioma do texto original: inglês

molecule-evolution-agent

Evolve Molecules

Idioma do texto original: inglês

multimodal-medical-imaging

Analyzes medical images (X-ray, MRI, CT) using multimodal LLMs to identify anomalies and generate reports.

Idioma do texto original: inglês

nicheformer-spatial-agent

Foundation model-powered spatial transcriptomics analysis leveraging 53M+ spatially resolved cells for cellular architecture modeling and tissue niche discovery.

Idioma do texto original: inglês

nk-cell-therapy-agent

AI-powered NK cell therapy design for cancer immunotherapy including CAR-NK engineering, memory-like NK generation, and KIR/HLA matching optimization.

Idioma do texto original: inglês

organoid-drug-response-agent

AI-powered analysis of patient-derived organoid (PDO) drug screening for personalized oncology treatment selection and biomarker discovery.

Idioma do texto original: inglês

pan-cancer-multiomics-agent

AI-powered pan-cancer analysis integrating genomic, transcriptomic, proteomic, and epigenomic data for cancer subtyping, driver identification, and cross-cancer pattern discovery.

Idioma do texto original: inglês

pharmacogenomics-agent

AI-driven pharmacogenomic analysis for precision dosing and adverse event prediction using multi-omics data.

Idioma do texto original: inglês

precision-oncology-agent

Fuse genomic variants, pathology findings, and clinical context to draft evidence-linked therapy options for tumor board review.

Idioma do texto original: inglês

protein-structure-prediction

Predicts 3D protein structures from amino acid sequences using ESMFold or AlphaFold3 (mock).

Idioma do texto original: inglês

rna-velocity-agent

AI-powered RNA velocity analysis for predicting cellular state transitions, differentiation trajectories, and dynamic gene regulation from single-cell RNA sequencing data.

Idioma do texto original: inglês

scrna-qc

Execute the MAD-based single-cell RNA-seq QC workflow (scripts + Python API) to filter low-quality cells and emit reports plus filtered AnnData files.

Idioma do texto original: inglês

single-cell-rna-qc

Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or…

Idioma do texto original: inglês

spatial-agent

An agent that interprets spatial transcriptomics data to propose mechanistic hypotheses and analyze tissue organization.

Idioma do texto original: inglês

spatial-epigenomics-agent

AI-powered spatial epigenomics analysis combining chromatin accessibility, histone modifications, and DNA methylation with spatial coordinates for tissue architecture mapping.

Idioma do texto original: inglês

spatial-transcriptomics-agent

Spatial analyst

Idioma do texto original: inglês