swaruplab/operon - Page 10

cellular-senescence-agent

AI-powered analysis of cellular senescence for aging research, cancer therapy response, and senolytic drug development.

Langue du texte source : anglais

chatehr-clinician-assistant

EHR Chat Assistant

Langue du texte source : anglais

chematagent-drug-discovery

Chemical Lab Agent

Langue du texte source : anglais

chemcrow-drug-discovery

An LLM chemistry agent with expert-designed tools for organic synthesis, drug discovery, and materials design.

Langue du texte source : anglais

chemical-property-lookup

Compute RDKit-driven molecular properties (MW, logP, TPSA, QED, Lipinski) for a SMILES string to support downstream drug discovery tools.

Langue du texte source : anglais

chemist-analyst

Analyzes events through chemistry lens using molecular structure, reaction mechanisms, thermodynamics, kinetics, and analytical techniques (spectroscopy, chromatography, mass spectrometry). Provides insights on chemical processes, material properties,…

Langue du texte source : anglais

chemistry-agent

Autonomous chemical synthesis & analysis

Langue du texte source : anglais

clinical-nlp-extractor

Extracts medical entities (Diseases, Medications, Procedures) from unstructured clinical text using regex and simple rules (or LLM wrappers).

Langue du texte source : anglais

clinical-note-summarization

Structure raw clinical notes into SOAP-format summaries with explicit contradictions, missing data, and ICD-linked assessments using the provided prompt + usage script.

Langue du texte source : anglais

crispr-guide-design

Guide foundry

Langue du texte source : anglais

crispr-offtarget-predictor

Predicts potential off-target sites for a given sgRNA sequence using mismatch analysis.

Langue du texte source : anglais

cryoem-ai-drug-design-agent

AI-powered integration of cryo-EM structural data with generative AI and molecular dynamics for structure-based drug design targeting flexible proteins and membrane complexes.

Langue du texte source : anglais

ctdna-dynamics-mrd-agent

AI-powered circulating tumor DNA dynamics analysis for molecular residual disease detection, treatment response monitoring, and early relapse prediction using liquid biopsy.

Langue du texte source : anglais

data-visualization-biomedical

Publication-quality visualizations for biomedical and genomics data. Use when creating volcano plots, heatmaps, UMAP plots, dot plots, survival curves, forest plots, or multi-panel figures. Includes scanpy, matplotlib, seaborn, plotly workflows with…

Langue du texte source : anglais

deep-visual-proteomics-agent

AI-driven integration of cellular imaging, laser microdissection, and ultra-sensitive mass spectrometry for spatially-resolved single-cell proteomics.

Langue du texte source : anglais

digital-twin-clinical-agent

AI-powered patient digital twin creation for clinical trial simulation, treatment outcome prediction, and personalized medicine using real-world data and multi-omics integration.

Langue du texte source : anglais

drug-interaction-checker

Checks for potential drug-drug interactions (DDIs) between a list of medications.

Langue du texte source : anglais

ehr-fhir-integration

Provides comprehensive tools for working with Electronic Health Records (EHR) using the HL7 FHIR standard.

Langue du texte source : anglais

epigenomics-methylgpt-agent

AI-powered DNA methylation analysis using MethylGPT foundation models for epigenomic profiling, differential methylation detection, and cancer epigenome characterization.

Langue du texte source : anglais

gene-panel-design-agent

AI-powered design of targeted gene panels for clinical and research applications including cancer diagnostics, pharmacogenomics, and rare disease testing.

Langue du texte source : anglais

gwas-lookup

Federated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, eQTL Catalogue, and more.

Langue du texte source : anglais

immune-checkpoint-combination-agent

AI-powered analysis for predicting optimal immune checkpoint inhibitor combinations based on tumor microenvironment, biomarkers, and molecular profiling.

Langue du texte source : anglais

long-read-sequencing-agent

AI-powered analysis of long-read sequencing data (PacBio, ONT) for structural variant detection, isoform discovery, epigenetic modifications, and de novo assembly.

Langue du texte source : anglais

microbiome-cancer-agent

AI-powered analysis of microbiome-cancer interactions including tumor microbiome profiling, immunotherapy response prediction, and microbiome-targeted therapeutic opportunities.

Langue du texte source : anglais

molecular-glue-discovery-agent

AI-powered molecular glue discovery for targeted protein degradation, enabling neo-substrate recruitment and undruggable target degradation through E3 ligase interface modulation.

Langue du texte source : anglais

molecule-evolution-agent

Evolve Molecules

Langue du texte source : anglais

multimodal-medical-imaging

Analyzes medical images (X-ray, MRI, CT) using multimodal LLMs to identify anomalies and generate reports.

Langue du texte source : anglais

nicheformer-spatial-agent

Foundation model-powered spatial transcriptomics analysis leveraging 53M+ spatially resolved cells for cellular architecture modeling and tissue niche discovery.

Langue du texte source : anglais

nk-cell-therapy-agent

AI-powered NK cell therapy design for cancer immunotherapy including CAR-NK engineering, memory-like NK generation, and KIR/HLA matching optimization.

Langue du texte source : anglais

organoid-drug-response-agent

AI-powered analysis of patient-derived organoid (PDO) drug screening for personalized oncology treatment selection and biomarker discovery.

Langue du texte source : anglais

pan-cancer-multiomics-agent

AI-powered pan-cancer analysis integrating genomic, transcriptomic, proteomic, and epigenomic data for cancer subtyping, driver identification, and cross-cancer pattern discovery.

Langue du texte source : anglais

pharmacogenomics-agent

AI-driven pharmacogenomic analysis for precision dosing and adverse event prediction using multi-omics data.

Langue du texte source : anglais

precision-oncology-agent

Fuse genomic variants, pathology findings, and clinical context to draft evidence-linked therapy options for tumor board review.

Langue du texte source : anglais

protein-structure-prediction

Predicts 3D protein structures from amino acid sequences using ESMFold or AlphaFold3 (mock).

Langue du texte source : anglais

rna-velocity-agent

AI-powered RNA velocity analysis for predicting cellular state transitions, differentiation trajectories, and dynamic gene regulation from single-cell RNA sequencing data.

Langue du texte source : anglais

scrna-qc

Execute the MAD-based single-cell RNA-seq QC workflow (scripts + Python API) to filter low-quality cells and emit reports plus filtered AnnData files.

Langue du texte source : anglais

single-cell-rna-qc

Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or…

Langue du texte source : anglais

spatial-agent

An agent that interprets spatial transcriptomics data to propose mechanistic hypotheses and analyze tissue organization.

Langue du texte source : anglais

spatial-epigenomics-agent

AI-powered spatial epigenomics analysis combining chromatin accessibility, histone modifications, and DNA methylation with spatial coordinates for tissue architecture mapping.

Langue du texte source : anglais

spatial-transcriptomics-agent

Spatial analyst

Langue du texte source : anglais