rnaseq-plot
Use when the user already has an RNA-seq count or expression matrix and needs downstream plots or analysis (normalize, PCA, DESeq2/edgeR/limma, volcano, heatmap, GO/KEGG, GSEA, WGCNA). Call the rnaseq-plot MCP tools named rgraph_*; do not redraw in Python.
Informations de source
- Dépôt
- MiniMax-AI/MiniMax-Code-Plugins
- Dernière activité de la source
- 25 août 2026 à 02:52
- Langue détectée de SKILL.md
- anglais
- Étoiles
- 18
- Forks
- 13
Options d'installation
Le prompt qui vérifie d'abord la source est sélectionné par défaut. Vous pouvez passer à une commande directe ou télécharger une copie locale.
Vérifiez les fichiers source
Lisez SKILL.md et les fichiers associés affichés par SkillsMP avant de décider de l'installer.
Affichage de SKILL.md
SKILL.md
Instructions source · Aperçu en lecture seule- name
- rnaseq-plot
- description
- Use when the user already has an RNA-seq count or expression matrix and needs downstream plots or analysis (normalize, PCA, DESeq2/edgeR/limma, volcano, heatmap, GO/KEGG, GSEA, WGCNA). Call the rnaseq-plot MCP tools named rgraph_*; do not redraw in Python.
# rnaseq-plot
Use the `rnaseq-plot` MCP server. Tool functions are still named `rgraph_*`. Prefer R-rendered png+pdf over matplotlib copies.
## Typical order
1. `rgraph_env` — confirm Rscript and packages
2. `rgraph_normalize` / `rgraph_pca` / `rgraph_correlation` as needed
3. `rgraph_diff` — default significance metric is **padj**, not raw p-value
4. `rgraph_volcano`, `rgraph_heatmap`, `rgraph_enrich`, `rgraph_gsea`, `rgraph_wgcna` as requested
Required table columns are in the Plugin README (`sample_name`/`group`, `gene_id`, counts).
If Rscript is missing, return the generated `.R` script and the command to run it. If a package is missing, return the install hint from the tool. Do not pretend the figure was drawn.
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