eightmm/codex-science - 第 2 页

cancer-genomics-evidence

Synthesize public cancer genomic alterations across genes, cohorts, molecular profiles, clinical annotations, and literature. Use for somatic landscape, biomarker, resistance, or translational oncology research.

原文语言：英语

cbioportal-search

Resolve cancer genes and plan public cBioPortal cohort queries. Use for somatic alteration, cancer cohort, co-alteration, survival, or translational oncology evidence.

原文语言：英语

chebi-search

Resolve chemical entities, ontology identifiers, formulae, and structures through ChEBI. Use before chemistry, metabolite, reaction, or pharmacology workflows when names or identifiers are ambiguous.

原文语言：英语

expression-cell-context

Reconcile gene expression across GTEx, Human Protein Atlas, Bgee, cell atlases, and disease datasets. Use for tissue, cell-type, developmental, baseline-versus-disease, or target-expression questions.

原文语言：英语

gene-burden-evidence

Assess rare-variant gene burden evidence with explicit cohort, ancestry, mask, frequency threshold, model, phenotype, and multiple-testing semantics. Use for gene-level human genetic support and locus-to-gene follow-up.

原文语言：英语

gwas-catalog-search

Resolve traits and discover curated human genetic association evidence with GWAS Catalog REST API v2. Use for trait, locus, variant, ancestry, study, and locus-to-gene research.

原文语言：英语

metabolomics-proteomics-context

Integrate public metabolite, reaction, protein, proteomics, and study evidence. Use for pathway mechanism, biomarker context, multi-omics follow-up, or dataset selection.

原文语言：英语

mgnify-search

Discover public microbiome and metagenomics studies through MGnify. Use for biome, sample, assembly, taxonomic, functional, or public microbiome dataset questions.

原文语言：英语

mygene-search

Normalize human gene symbols and aliases to Entrez, Ensembl, and taxonomic identifiers with MyGene.info. Use before cross-database gene, target, expression, or variant research when identifiers are incomplete or inconsistent.

原文语言：英语

ncbi-gene-search

Resolve human genes through NCBI Entrez Gene and preserve links to sequence, literature, variation, and GEO resources. Use for NCBI-centered gene and identifier research.

原文语言：英语

ncbi-integrated-research

Run bounded NCBI-centered research across Gene, PubMed/PMC, sequence, variation, and GEO-linked records. Use when a gene, accession, sequence, or literature question requires traceable NCBI cross-links.

原文语言：英语

phewas-replication-analysis

Compare one normalized variant across FinnGen, BioBank Japan, and UKB/TOPMed PheWAS evidence. Use for phenotype-wide replication, ancestry heterogeneity, pleiotropy screening, or cohort comparison.

原文语言：英语

pride-search

Discover public proteomics projects through PRIDE Archive. Use for mass-spectrometry datasets, reanalysis candidates, protein evidence, or public-study discovery.

原文语言：英语

proteomexchange-search

Resolve a known PXD accession through ProteomeXchange. Use for cross-repository accession verification and proteomics reanalysis planning; use PRIDE for keyword discovery.

原文语言：英语

rhea-search

Search curated biochemical reactions and participants through Rhea. Use for enzyme, pathway, metabolite, reaction-direction, or mechanism context.

原文语言：英语

rnacentral-search

Resolve non-coding RNA identifiers, sequences, types, and cross-references through RNAcentral. Use for RNA annotation, accession normalization, ncRNA, or sequence-context research.

原文语言：英语

cx-bgee-expression-search

Find ontology-aware healthy wild-type gene expression context with Bgee. Use for cross-species, anatomical, developmental-stage, or baseline-expression questions.

原文语言：英语

cx-biomedical-entity-normalization

Normalize genes, proteins, variants, diseases, phenotypes, compounds, reactions, tissues, cell types, organisms, studies, and accessions before multi-source biomedical research. Use whenever aliases, assemblies, releases, or identifier namespaces could change…

原文语言：英语

cx-biomedical-evidence-reconciliation

Reconcile conflicting multi-source biomedical evidence with explicit entity, release, cohort, assay, independence, and claim semantics. Use before final conclusions from multiple databases or evidence lanes.

原文语言：英语

cx-biostudies-search

Discover public life-science studies and associated archive records through EMBL-EBI BioStudies. Use for ArrayExpress, supplementary-data, accession, and public dataset discovery.

原文语言：英语

cx-cancer-genomics-evidence

Synthesize public cancer genomic alterations across genes, cohorts, molecular profiles, clinical annotations, and literature. Use for somatic landscape, biomarker, resistance, or translational oncology research.

原文语言：英语

cx-cbioportal-search

Resolve cancer genes and plan public cBioPortal cohort queries. Use for somatic alteration, cancer cohort, co-alteration, survival, or translational oncology evidence.

原文语言：英语

cx-chebi-search

Resolve chemical entities, ontology identifiers, formulae, and structures through ChEBI. Use before chemistry, metabolite, reaction, or pharmacology workflows when names or identifiers are ambiguous.

原文语言：英语

cx-expression-cell-context

Reconcile gene expression across GTEx, Human Protein Atlas, Bgee, cell atlases, and disease datasets. Use for tissue, cell-type, developmental, baseline-versus-disease, or target-expression questions.

原文语言：英语

cx-gene-burden-evidence

Assess rare-variant gene burden evidence with explicit cohort, ancestry, mask, frequency threshold, model, phenotype, and multiple-testing semantics. Use for gene-level human genetic support and locus-to-gene follow-up.

原文语言：英语

cx-gwas-catalog-search

Resolve traits and discover curated human genetic association evidence with GWAS Catalog REST API v2. Use for trait, locus, variant, ancestry, study, and locus-to-gene research.

原文语言：英语

cx-life-science-research-routing

Route broad or multi-step life-science questions into normalized entities, the smallest independent evidence lanes, reproducible retrieval, conflict reconciliation, and review. Use for target, variant, disease, omics, structure, pharmacology, clinical, or…

原文语言：英语

cx-locus-to-gene-prioritization

Prioritize candidate genes at human genetic loci using curated association, credible-set/L2G, colocalization, eQTL, coding, burden, expression, and pathway evidence. Use for GWAS follow-up and target prioritization.

原文语言：英语

cx-metabolomics-proteomics-context

Integrate public metabolite, reaction, protein, proteomics, and study evidence. Use for pathway mechanism, biomarker context, multi-omics follow-up, or dataset selection.

原文语言：英语

cx-mgnify-search

Discover public microbiome and metagenomics studies through MGnify. Use for biome, sample, assembly, taxonomic, functional, or public microbiome dataset questions.

原文语言：英语

cx-mygene-search

Normalize human gene symbols and aliases to Entrez, Ensembl, and taxonomic identifiers with MyGene.info. Use before cross-database gene, target, expression, or variant research when identifiers are incomplete or inconsistent.

原文语言：英语

cx-ncbi-gene-search

Resolve human genes through NCBI Entrez Gene and preserve links to sequence, literature, variation, and GEO resources. Use for NCBI-centered gene and identifier research.

原文语言：英语

cx-ncbi-integrated-research

Run bounded NCBI-centered research across Gene, PubMed/PMC, sequence, variation, and GEO-linked records. Use when a gene, accession, sequence, or literature question requires traceable NCBI cross-links.

原文语言：英语

cx-phewas-replication-analysis

Compare one normalized variant across FinnGen, BioBank Japan, and UKB/TOPMed PheWAS evidence. Use for phenotype-wide replication, ancestry heterogeneity, pleiotropy screening, or cohort comparison.

原文语言：英语

cx-pride-search

Discover public proteomics projects through PRIDE Archive. Use for mass-spectrometry datasets, reanalysis candidates, protein evidence, or public-study discovery.

原文语言：英语

cx-proteomexchange-search

Resolve a known PXD accession through ProteomeXchange. Use for cross-repository accession verification and proteomics reanalysis planning; use PRIDE for keyword discovery.

原文语言：英语

cx-public-omics-dataset-discovery

Discover and triage reusable public transcriptomics, proteomics, metabolomics, microbiome, and supplementary-study datasets. Use when a research question needs external data rather than only literature.

原文语言：英语

cx-rhea-search

Search curated biochemical reactions and participants through Rhea. Use for enzyme, pathway, metabolite, reaction-direction, or mechanism context.

原文语言：英语

cx-rnacentral-search

Resolve non-coding RNA identifiers, sequences, types, and cross-references through RNAcentral. Use for RNA annotation, accession normalization, ncRNA, or sequence-context research.

原文语言：英语

cx-translational-pharmacology-evidence

Synthesize target, ligand, mechanism, exposure, safety, pharmacogenomic, trial, and regulatory evidence for translational pharmacology questions. Use for target-drug-indication landscapes, not prescribing.

原文语言：英语