microbe
Use when the user has a 16S or ITS feature table plus taxonomy and metadata and needs alpha/beta diversity, composition bars, differential abundance, co-occurrence networks, random-forest biomarkers, or a taxonomy tree. Drive the microbe MCP tools with local Rscript.
Datos de origen
- Repositorio
- MiniMax-AI/MiniMax-Code-Plugins
- Última actividad en el origen
- 25 de agosto de 2026 a las 02:52
- Idioma detectado de SKILL.md
- inglés
- Estrellas
- 11
- Forks
- 10
Opciones de instalación
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Instrucciones de origen · Vista previa de solo lectura- name
- microbe
- description
- Use when the user has a 16S or ITS feature table plus taxonomy and metadata and needs alpha/beta diversity, composition bars, differential abundance, co-occurrence networks, random-forest biomarkers, or a taxonomy tree. Drive the microbe MCP tools with local Rscript.
# microbe
Use the `microbe` MCP tools. Do not reimplement vegan/DESeq2 plots in Python.
## Typical order
1. `microbe_env`
2. `microbe_alpha`, `microbe_beta`
3. `microbe_composition`, `microbe_diff`
4. `microbe_network`, `microbe_rf`, `microbe_corr`, `microbe_tree` as requested
Expected columns: `feature_id` + sample counts; taxonomy ranks or a QIIME semicolon string; `sample_name` + `group`.
Missing R or packages: return the tool's repair command. This Plugin does not go from raw reads to ASVs.
Ver en GitHub